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3gio

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{{Seed}}
 
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[[Image:3gio.jpg|left|200px]]
 
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==Crystal structure of the TNF-alpha inducing protein (Tip alpha) from Helicobacter pylori==
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The line below this paragraph, containing "STRUCTURE_3gio", creates the "Structure Box" on the page.
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<StructureSection load='3gio' size='340' side='right'caption='[[3gio]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3gio]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GIO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GIO FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3gio| PDB=3gio | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gio FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gio OCA], [https://pdbe.org/3gio PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gio RCSB], [https://www.ebi.ac.uk/pdbsum/3gio PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gio ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/O25318_HELPY O25318_HELPY]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Helicobacter pylori infection is one of the highest risk factors for gastroduodenal diseases including gastric cancer. Tumor necrosis factor-alpha (TNF-alpha) is one of the essential cytokines for tumor promotion, and thus, an H. pylori protein that induces TNF-alpha is believed to play a significant role in gastric cancer development in humans. The HP0596 gene product of H. pylori strain 26695 was identified as the TNF-alpha-inducing protein (Tipalpha). Tipalpha is secreted from H. pylori as dimers and enters the gastric cells. It was shown to have a DNA-binding activity. Here, we have determined the crystal structure of Tipalpha from H. pylori. Its monomer consists of two structural domains ("mixed domain" and "helical domain"). Tipalpha exists as a dimer in the crystal, and the dimeric structure represents a novel scaffold for DNA binding. A positively charged surface patch formed across the two monomers of the Tipalpha dimer by the loop between helices alpha1 and alpha2 may be important in DNA binding.
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===Crystal structure of the TNF-alpha inducing protein (Tip alpha) from Helicobacter pylori===
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Crystal structure of the TNF-alpha-Inducing protein (Tipalpha) from Helicobacter pylori: Insights into Its DNA-binding activity.,Jang JY, Yoon HJ, Yoon JY, Kim HS, Lee SJ, Kim KH, Kim do J, Jang S, Han BG, Lee BI, Suh SW J Mol Biol. 2009 Sep 11;392(1):191-7. Epub 2009 Jul 10. PMID:19596016<ref>PMID:19596016</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19596016}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3gio" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19596016 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19596016}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3GIO is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GIO OCA].
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==Reference==
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<ref group="xtra">PMID:19596016</ref><references group="xtra"/>
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[[Category: Helicobacter pylori]]
[[Category: Helicobacter pylori]]
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[[Category: Han, B G.]]
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[[Category: Large Structures]]
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[[Category: Jang, J Y.]]
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[[Category: Han BG]]
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[[Category: Jang, S.]]
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[[Category: Jang JY]]
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[[Category: Kim, D J.]]
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[[Category: Jang S]]
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[[Category: Kim, H S.]]
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[[Category: Kim DJ]]
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[[Category: Kim, K H.]]
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[[Category: Kim HS]]
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[[Category: Lee, B I.]]
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[[Category: Kim KH]]
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[[Category: Lee, S J.]]
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[[Category: Lee BI]]
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[[Category: Suh, S W.]]
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[[Category: Lee SJ]]
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[[Category: Yoon, H J.]]
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[[Category: Suh SW]]
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[[Category: Yoon, J Y.]]
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[[Category: Yoon HJ]]
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[[Category: Antiparallel beta sheet]]
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[[Category: Yoon JY]]
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[[Category: Dna binding protein]]
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[[Category: Four-helix bundle]]
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[[Category: Loop]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 5 10:25:04 2009''
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Current revision

Crystal structure of the TNF-alpha inducing protein (Tip alpha) from Helicobacter pylori

PDB ID 3gio

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