This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5oql

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:58, 13 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum==
==Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum==
-
<StructureSection load='5oql' size='340' side='right'caption='[[5oql]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+
<SX load='5oql' size='340' side='right' viewer='molstar' caption='[[5oql]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5oql]] is a 54 chain structure with sequence from [http://en.wikipedia.org/wiki/Chatd Chatd] and [http://en.wikipedia.org/wiki/Chaetomium_thermophilum_(strain_dsm_1495_/_cbs_144.50_/_imi_039719) Chaetomium thermophilum (strain dsm 1495 / cbs 144.50 / imi 039719)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OQL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OQL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5oql]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Chaetomium_thermophilum_var._thermophilum_DSM_1495 Chaetomium thermophilum var. thermophilum DSM 1495]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OQL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OQL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oql OCA], [http://pdbe.org/5oql PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oql RCSB], [http://www.ebi.ac.uk/pdbsum/5oql PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oql ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5oql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oql OCA], [https://pdbe.org/5oql PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5oql RCSB], [https://www.ebi.ac.uk/pdbsum/5oql PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5oql ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/G0S3V7_CHATD G0S3V7_CHATD]] Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.[PIRNR:PIRNR006515] [[http://www.uniprot.org/uniprot/PNO1_CHATD PNO1_CHATD]] Required for small ribosomal subunit (SSU) synthesis. Has a role in the processing of early nucleolar and late cytoplasmic pre-RNA species.[UniProtKB:Q99216] [[http://www.uniprot.org/uniprot/UTP11_CHATD UTP11_CHATD]] Involved in nucleolar processing of pre-18S ribosomal RNA.[UniProtKB:P34247]
+
[https://www.uniprot.org/uniprot/G0SF93_CHATD G0SF93_CHATD]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5oql" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5oql" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ribosome 3D structures|Ribosome 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
-
</StructureSection>
+
</SX>
-
[[Category: Chatd]]
+
[[Category: Chaetomium thermophilum var. thermophilum DSM 1495]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Beckmann, R]]
+
[[Category: Beckmann R]]
-
[[Category: Berninghausen, O]]
+
[[Category: Berninghausen O]]
-
[[Category: Cheng, J]]
+
[[Category: Cheng J]]
-
[[Category: Hurt, E]]
+
[[Category: Hurt E]]
-
[[Category: Kellner, N]]
+
[[Category: Kellner N]]
-
[[Category: Ribosome]]
+
-
[[Category: Ribosome biogenesis]]
+

Current revision

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

5oql, resolution 3.20Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools