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2jmw
From Proteopedia
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==Structure of DNA-Binding Domain of Arabidopsis GT-1== | ==Structure of DNA-Binding Domain of Arabidopsis GT-1== | ||
| - | <StructureSection load='2jmw' size='340' side='right' caption='[[2jmw | + | <StructureSection load='2jmw' size='340' side='right'caption='[[2jmw]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2jmw]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2jmw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JMW FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jmw OCA], [https://pdbe.org/2jmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jmw RCSB], [https://www.ebi.ac.uk/pdbsum/2jmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jmw ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/TGT1_ARATH TGT1_ARATH] Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals.<ref>PMID:10437822</ref> <ref>PMID:15044016</ref> <ref>PMID:7866025</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jm/2jmw_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jm/2jmw_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jmw ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2jmw" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Arabidopsis thaliana]] | [[Category: Arabidopsis thaliana]] | ||
| - | [[Category: Hiratsuka | + | [[Category: Large Structures]] |
| - | [[Category: Ikeda | + | [[Category: Hiratsuka K]] |
| - | [[Category: Katahira | + | [[Category: Ikeda Y]] |
| - | [[Category: Murata | + | [[Category: Katahira M]] |
| - | [[Category: Nagata | + | [[Category: Murata J]] |
| - | [[Category: Niyada | + | [[Category: Nagata T]] |
| - | [[Category: Noto | + | [[Category: Niyada E]] |
| - | [[Category: Uesugi | + | [[Category: Noto K]] |
| - | [[Category: Yamamoto | + | [[Category: Uesugi S]] |
| - | + | [[Category: Yamamoto Y]] | |
| - | + | ||
| - | + | ||
Current revision
Structure of DNA-Binding Domain of Arabidopsis GT-1
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Categories: Arabidopsis thaliana | Large Structures | Hiratsuka K | Ikeda Y | Katahira M | Murata J | Nagata T | Niyada E | Noto K | Uesugi S | Yamamoto Y
