This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2jre

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:11, 20 December 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2jre.jpg|left|200px]]
 
-
<!--
+
==C60-1, a PDZ domain designed using statistical coupling analysis==
-
The line below this paragraph, containing "STRUCTURE_2jre", creates the "Structure Box" on the page.
+
<StructureSection load='2jre' size='340' side='right'caption='[[2jre]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2jre]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JRE FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jre FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jre OCA], [https://pdbe.org/2jre PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jre RCSB], [https://www.ebi.ac.uk/pdbsum/2jre PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jre ProSAT]</span></td></tr>
-
{{STRUCTURE_2jre| PDB=2jre | SCENE= }}
+
</table>
-
 
+
== Evolutionary Conservation ==
-
===C60-1, a PDZ domain designed using statistical coupling analysis===
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jre_consurf.spt"</scriptWhenChecked>
-
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRE OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Larson, C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Li, P.]]
+
</jmolCheckbox>
-
[[Category: MacBeath, G.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jre ConSurf].
-
[[Category: Ranganathan, R.]]
+
<div style="clear:both"></div>
-
[[Category: Rosen, M.]]
+
__TOC__
-
[[Category: Stiffler, M.]]
+
</StructureSection>
-
[[Category: C60-1]]
+
[[Category: Large Structures]]
-
[[Category: De novo protein]]
+
[[Category: Larson C]]
-
[[Category: Pdz]]
+
[[Category: Li P]]
-
 
+
[[Category: MacBeath G]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 11:17:50 2008''
+
[[Category: Ranganathan R]]
 +
[[Category: Rosen M]]
 +
[[Category: Stiffler M]]

Current revision

C60-1, a PDZ domain designed using statistical coupling analysis

PDB ID 2jre

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2jre"
Personal tools