This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2wvb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:17, 20 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
==STRUCTURAL AND MECHANISTIC INSIGHTS INTO HELICOBACTER PYLORI NIKR FUNCTION==
+
==Structural and mechanistic insights into Helicobacter pylori NikR function==
-
<StructureSection load='2wvb' size='340' side='right' caption='[[2wvb]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='2wvb' size='340' side='right'caption='[[2wvb]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2wvb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WVB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WVB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2wvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WVB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2caj|2caj]], [[2ca9|2ca9]], [[2cad|2cad]], [[2wvd|2wvd]], [[2wve|2wve]], [[2wvf|2wvf]], [[2wvc|2wvc]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wvb OCA], [http://pdbe.org/2wvb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wvb RCSB], [http://www.ebi.ac.uk/pdbsum/2wvb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wvb ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wvb OCA], [https://pdbe.org/2wvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wvb RCSB], [https://www.ebi.ac.uk/pdbsum/2wvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wvb ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NIKR_HELPY NIKR_HELPY]] Transcriptional regulator (Potential).
+
[https://www.uniprot.org/uniprot/NIKR_HELPY NIKR_HELPY] Transcriptional regulator (Potential).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wv/2wvb_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wv/2wvb_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 33: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Campylobacter pylori]]
+
[[Category: Helicobacter pylori 26695]]
-
[[Category: Bahlawane, C]]
+
[[Category: Large Structures]]
-
[[Category: Delay, C]]
+
[[Category: Bahlawane C]]
-
[[Category: Dian, C]]
+
[[Category: De Reuse H]]
-
[[Category: Fauquant, C]]
+
[[Category: Delay C]]
-
[[Category: Michaud-Soret, I]]
+
[[Category: Dian C]]
-
[[Category: Muller, C]]
+
[[Category: Fauquant C]]
-
[[Category: Reuse, H De]]
+
[[Category: Michaud-Soret I]]
-
[[Category: Round, A]]
+
[[Category: Muller C]]
-
[[Category: Schauer, K]]
+
[[Category: Round A]]
-
[[Category: Terradot, L]]
+
[[Category: Schauer K]]
-
[[Category: Dna-binding]]
+
[[Category: Terradot L]]
-
[[Category: Metal-binding]]
+
-
[[Category: Metalloregulator]]
+
-
[[Category: Rhh]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription factor]]
+
-
[[Category: Transcription regulation]]
+

Current revision

Structural and mechanistic insights into Helicobacter pylori NikR function

PDB ID 2wvb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2wvb"
Personal tools