This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2xpj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:36, 20 December 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2xpj.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of Physalis Mottle Virus with intact ordered RNA==
-
The line below this paragraph, containing "STRUCTURE_2xpj", creates the "Structure Box" on the page.
+
<StructureSection load='2xpj' size='340' side='right'caption='[[2xpj]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2xpj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XPJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XPJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.4&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xpj OCA], [https://pdbe.org/2xpj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xpj RCSB], [https://www.ebi.ac.uk/pdbsum/2xpj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xpj ProSAT]</span></td></tr>
-
{{STRUCTURE_2xpj| PDB=2xpj | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/COAT_PHMV COAT_PHMV]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xp/2xpj_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xpj ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF PHYSALIS MOTTLE VIRUS WITH INTACT ORDERED RNA===
+
==See Also==
-
 
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2XPJ is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XPJ OCA].
+
[[Category: Large Structures]]
[[Category: Physalis mottle virus]]
[[Category: Physalis mottle virus]]
-
[[Category: Murthy, M R.N.]]
+
[[Category: Murthy MRN]]
-
[[Category: Rajaram, V.]]
+
[[Category: Rajaram V]]
-
[[Category: Sagurthi, S R.]]
+
[[Category: Sagurthi SR]]
-
[[Category: Savithri, H S.]]
+
[[Category: Savithri HS]]
-
[[Category: Plant rna virus]]
+
-
[[Category: Virus]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:46:59 2010''
+

Current revision

Crystal structure of Physalis Mottle Virus with intact ordered RNA

PDB ID 2xpj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2xpj"
Personal tools