This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2y84

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:47, 20 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
==DNTR INDUCER BINDING DOMAIN==
+
 
-
<StructureSection load='2y84' size='340' side='right' caption='[[2y84]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+
==DntR Inducer Binding Domain==
 +
<StructureSection load='2y84' size='340' side='right'caption='[[2y84]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2y84]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp._dnt Burkholderia sp. dnt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y84 OCA]. <br>
+
<table><tr><td colspan='2'>[[2y84]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_sp._DNT Burkholderia sp. DNT]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y84 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y84 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1uth|1uth]], [[2y7r|2y7r]], [[2y7w|2y7w]], [[1utb|1utb]], [[2y7k|2y7k]], [[2y7p|2y7p]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y84 OCA], [https://pdbe.org/2y84 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y84 RCSB], [https://www.ebi.ac.uk/pdbsum/2y84 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y84 ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2y84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y84 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2y84 RCSB], [http://www.ebi.ac.uk/pdbsum/2y84 PDBsum]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7WT50_9BURK Q7WT50_9BURK]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 14: Line 16:
Crystal structures of DntR inducer binding domains in complex with salicylate offer insights into the activation of LysR-type transcriptional regulators.,Devesse L, Smirnova I, Lonneborg R, Kapp U, Brzezinski P, Leonard GA, Dian C Mol Microbiol. 2011 Jul;81(2):354-367. doi:, 10.1111/j.1365-2958.2011.07673.x. Epub 2011 Jun 22. PMID:21692874<ref>PMID:21692874</ref>
Crystal structures of DntR inducer binding domains in complex with salicylate offer insights into the activation of LysR-type transcriptional regulators.,Devesse L, Smirnova I, Lonneborg R, Kapp U, Brzezinski P, Leonard GA, Dian C Mol Microbiol. 2011 Jul;81(2):354-367. doi:, 10.1111/j.1365-2958.2011.07673.x. Epub 2011 Jun 22. PMID:21692874<ref>PMID:21692874</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2y84" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Burkholderia sp. dnt]]
+
[[Category: Burkholderia sp. DNT]]
-
[[Category: Brzezinski, P.]]
+
[[Category: Large Structures]]
-
[[Category: Devesse, L.]]
+
[[Category: Brzezinski P]]
-
[[Category: Dian, C.]]
+
[[Category: Devesse L]]
-
[[Category: Kapp, U.]]
+
[[Category: Dian C]]
-
[[Category: Leonard, G A.]]
+
[[Category: Kapp U]]
-
[[Category: Lonneborg, R.]]
+
[[Category: Leonard GA]]
-
[[Category: Smirnova, I.]]
+
[[Category: Lonneborg R]]
-
[[Category: Transcription]]
+
[[Category: Smirnova I]]

Current revision

DntR Inducer Binding Domain

PDB ID 2y84

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools