This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2yam

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:48, 20 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==X-ray induced reduction of laccase from Thermus thermophilus HB27 (37. 5-50.0 percent dose)==
==X-ray induced reduction of laccase from Thermus thermophilus HB27 (37. 5-50.0 percent dose)==
-
<StructureSection load='2yam' size='340' side='right' caption='[[2yam]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='2yam' size='340' side='right'caption='[[2yam]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2yam]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet2 Thet2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YAM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YAM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2yam]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YAM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YAM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yah|2yah]], [[2xu9|2xu9]], [[2xvb|2xvb]], [[2yae|2yae]], [[2xuw|2xuw]], [[2yaf|2yaf]], [[2yao|2yao]], [[2yap|2yap]], [[2yaq|2yaq]], [[2yar|2yar]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Laccase Laccase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.2 1.10.3.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yam FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yam OCA], [https://pdbe.org/2yam PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yam RCSB], [https://www.ebi.ac.uk/pdbsum/2yam PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yam ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yam FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yam OCA], [http://pdbe.org/2yam PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yam RCSB], [http://www.ebi.ac.uk/pdbsum/2yam PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q72HW2_THET2 Q72HW2_THET2]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 19:
</div>
</div>
<div class="pdbe-citations 2yam" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 2yam" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Laccase 3D structures|Laccase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Laccase]]
+
[[Category: Large Structures]]
-
[[Category: Thet2]]
+
[[Category: Thermus thermophilus HB27]]
-
[[Category: Rudino-Pinera, E]]
+
[[Category: Rudino-Pinera E]]
-
[[Category: Serrano-Posada, H]]
+
[[Category: Serrano-Posada H]]
-
[[Category: Multicopper oxidase]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

X-ray induced reduction of laccase from Thermus thermophilus HB27 (37. 5-50.0 percent dose)

PDB ID 2yam

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools