This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2yd3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:50, 20 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
==CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE SIGMA==
+
 
-
<StructureSection load='2yd3' size='340' side='right' caption='[[2yd3]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
==Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine Phosphatase Sigma==
 +
<StructureSection load='2yd3' size='340' side='right'caption='[[2yd3]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2yd3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YD3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YD3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2yd3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YD3 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2fh7|2fh7]], [[2yd6|2yd6]], [[2yd7|2yd7]], [[2yd1|2yd1]], [[2yd8|2yd8]], [[2yd5|2yd5]], [[2yd2|2yd2]], [[2yd4|2yd4]], [[2yd9|2yd9]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yd3 OCA], [https://pdbe.org/2yd3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yd3 RCSB], [https://www.ebi.ac.uk/pdbsum/2yd3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yd3 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yd3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yd3 RCSB], [http://www.ebi.ac.uk/pdbsum/2yd3 PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PTPRS_HUMAN PTPRS_HUMAN]] Interacts with LAR-interacting protein LIP.1.
+
[https://www.uniprot.org/uniprot/PTPRS_HUMAN PTPRS_HUMAN] Interacts with LAR-interacting protein LIP.1.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2yd3" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Tyrosine phosphatase|Tyrosine phosphatase]]
+
*[[Tyrosine phosphatase 3D structures|Tyrosine phosphatase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 26: Line 27:
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Protein-tyrosine-phosphatase]]
+
[[Category: Large Structures]]
-
[[Category: Aricescu, A R]]
+
[[Category: Aricescu AR]]
-
[[Category: Coles, C H]]
+
[[Category: Coles CH]]
-
[[Category: Flanagan, J G]]
+
[[Category: Flanagan JG]]
-
[[Category: Gallagher, J T]]
+
[[Category: Gallagher JT]]
-
[[Category: Jones, E Y]]
+
[[Category: Jones EY]]
-
[[Category: Lu, W]]
+
[[Category: Lu W]]
-
[[Category: Shen, Y]]
+
[[Category: Shen Y]]
-
[[Category: Siebold, C]]
+
[[Category: Siebold C]]
-
[[Category: Sutton, G C]]
+
[[Category: Sutton GC]]
-
[[Category: Tenney, A P]]
+
[[Category: Tenney AP]]
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine Phosphatase Sigma

PDB ID 2yd3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools