This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2yk7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:54, 20 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of Neisseria LOS-specific sialyltransferase (NST), in complex with CMP-3F-Neu5Ac.==
==Structure of Neisseria LOS-specific sialyltransferase (NST), in complex with CMP-3F-Neu5Ac.==
-
<StructureSection load='2yk7' size='340' side='right' caption='[[2yk7]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
+
<StructureSection load='2yk7' size='340' side='right'caption='[[2yk7]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2yk7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neimi Neimi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YK7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2yk7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis_serogroup_B Neisseria meningitidis serogroup B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YK7 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CSF:CYTIDINE-5-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC+ACID'>CSF</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.18&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yk4|2yk4]], [[2yk5|2yk5]], [[2yk6|2yk6]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CSF:CYTIDINE-5-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC+ACID'>CSF</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yk7 OCA], [http://pdbe.org/2yk7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yk7 RCSB], [http://www.ebi.ac.uk/pdbsum/2yk7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yk7 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yk7 OCA], [https://pdbe.org/2yk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yk7 RCSB], [https://www.ebi.ac.uk/pdbsum/2yk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yk7 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/LST_NEIMB LST_NEIMB]] Transfers sialic acid from the substrate CMP-sialic acid donor to the terminal beta-D-galactosyl-1,4-acetyl-beta-D-glucosamine on the lacto-N-neotetraose branch of the lipooligosaccharide.
+
[https://www.uniprot.org/uniprot/LST_NEIMB LST_NEIMB] Transfers sialic acid from the substrate CMP-sialic acid donor to the terminal beta-D-galactosyl-1,4-acetyl-beta-D-glucosamine on the lacto-N-neotetraose branch of the lipooligosaccharide.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 2yk7" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 2yk7" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Sialyltransferase 3D structures|Sialyltransferase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Neimi]]
+
[[Category: Large Structures]]
-
[[Category: Chiu, C P.C]]
+
[[Category: Neisseria meningitidis serogroup B]]
-
[[Category: Lameignere, E]]
+
[[Category: Chiu CPC]]
-
[[Category: Lin, L Y.C]]
+
[[Category: Lameignere E]]
-
[[Category: Rakic, B]]
+
[[Category: Lin LYC]]
-
[[Category: Strynadka, N C.J]]
+
[[Category: Rakic B]]
-
[[Category: Wakarchuk, W W]]
+
[[Category: Strynadka NCJ]]
-
[[Category: Withers, S G]]
+
[[Category: Wakarchuk WW]]
-
[[Category: Transferase]]
+
[[Category: Withers SG]]

Current revision

Structure of Neisseria LOS-specific sialyltransferase (NST), in complex with CMP-3F-Neu5Ac.

PDB ID 2yk7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools