2yme
From Proteopedia
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- | [[Image:2yme.jpg|left|200px]] | ||
- | + | ==Crystal structure of a mutant binding protein (5HTBP-AChBP) in complex with granisetron== | |
+ | <StructureSection load='2yme' size='340' side='right'caption='[[2yme]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[2yme]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Aplysia_californica Aplysia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YME OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YME FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CWB:1-METHYL-N-[(1R,5S)-9-METHYL-9-AZABICYCLO[3.3.1]NONAN-3-YL]INDAZOLE-3-CARBOXAMIDE'>CWB</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yme OCA], [https://pdbe.org/2yme PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yme RCSB], [https://www.ebi.ac.uk/pdbsum/2yme PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yme ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q8WSF8_APLCA Q8WSF8_APLCA] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The 5-HT3 receptor is a pentameric serotonin-gated ion channel, which mediates rapid excitatory neurotransmission and is the target of a therapeutically important class of anti-emetic drugs, such as granisetron. We report crystal structures of a binding protein engineered to recognize the agonist serotonin and the antagonist granisetron with affinities comparable to the 5-HT3 receptor. In the serotonin-bound structure, we observe hydrophilic interactions with loop E-binding site residues, which might enable transitions to channel opening. In the granisetron-bound structure, we observe a critical cation-pi interaction between the indazole moiety of the ligand and a cationic centre in loop D, which is uniquely present in the 5-HT3 receptor. We use a series of chemically tuned granisetron analogues to demonstrate the energetic contribution of this electrostatic interaction to high-affinity ligand binding in the human 5-HT3 receptor. Our study offers the first structural perspective on recognition of serotonin and antagonism by anti-emetics in the 5-HT3 receptor. | ||
- | + | Structural basis of ligand recognition in 5-HT3 receptors.,Kesters D, Thompson AJ, Brams M, van Elk R, Spurny R, Geitmann M, Villalgordo JM, Guskov A, Helena Danielson U, Lummis SC, Smit AB, Ulens C EMBO Rep. 2012 Nov 30. doi: 10.1038/embor.2012.189. PMID:23196367<ref>PMID:23196367</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
+ | </div> | ||
+ | <div class="pdbe-citations 2yme" style="background-color:#fffaf0;"></div> | ||
- | == | + | ==See Also== |
- | [[ | + | *[[Acetylcholine binding protein 3D structures|Acetylcholine binding protein 3D structures]] |
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Aplysia californica]] | [[Category: Aplysia californica]] | ||
- | [[Category: Brams | + | [[Category: Large Structures]] |
- | [[Category: Danielson | + | [[Category: Brams M]] |
- | [[Category: Elk | + | [[Category: Danielson UH]] |
- | [[Category: Geitmann | + | [[Category: Elk Rv]] |
- | [[Category: Guskov | + | [[Category: Geitmann M]] |
- | [[Category: Kesters | + | [[Category: Guskov A]] |
- | [[Category: Lummis | + | [[Category: Kesters D]] |
- | [[Category: Smit | + | [[Category: Lummis SCR]] |
- | [[Category: Spurny | + | [[Category: Smit AB]] |
- | [[Category: Thompson | + | [[Category: Spurny R]] |
- | [[Category: Ulens | + | [[Category: Thompson AJ]] |
- | [[Category: Villalgordo | + | [[Category: Ulens C]] |
- | + | [[Category: Villalgordo JM]] | |
- | + |
Current revision
Crystal structure of a mutant binding protein (5HTBP-AChBP) in complex with granisetron
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Categories: Aplysia californica | Large Structures | Brams M | Danielson UH | Elk Rv | Geitmann M | Guskov A | Kesters D | Lummis SCR | Smit AB | Spurny R | Thompson AJ | Ulens C | Villalgordo JM