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2ymt

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{{STRUCTURE_2ymt| PDB=2ymt | SCENE= }}
 
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===gamma 2 adaptin EAR domain crystal structure with phage peptide GEEWGPWV===
 
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==Function==
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==gamma 2 adaptin EAR domain crystal structure with phage peptide GEEWGPWV==
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[[http://www.uniprot.org/uniprot/AP1G2_HUMAN AP1G2_HUMAN]] May function in protein sorting in late endosomes or multivesucular bodies (MVBs). Involved in MVB-assisted maturation of hepatitis B virus (HBV).<ref>PMID:9733768</ref> <ref>PMID:16867982</ref> <ref>PMID:17553870</ref>
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<StructureSection load='2ymt' size='340' side='right'caption='[[2ymt]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2ymt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YMT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YMT FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.802&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PDO:1,3-PROPANDIOL'>PDO</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ymt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ymt OCA], [https://pdbe.org/2ymt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ymt RCSB], [https://www.ebi.ac.uk/pdbsum/2ymt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ymt ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AP1G2_HUMAN AP1G2_HUMAN] May function in protein sorting in late endosomes or multivesucular bodies (MVBs). Involved in MVB-assisted maturation of hepatitis B virus (HBV).<ref>PMID:9733768</ref> <ref>PMID:16867982</ref> <ref>PMID:17553870</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hepatitis B virus (HBV) is an infectious, potentially lethal human pathogen. However, there are no effective therapies for chronic HBV infections. Antiviral development is hampered by the lack of high-resolution structures for essential HBV protein-protein interactions. The interaction between preS1, an HBV surface-protein domain, and its human binding partner, gamma2-adaptin, subverts the membrane-trafficking apparatus to mediate virion export. This interaction is a putative drug target. We report here atomic-resolution descriptions of the binding thermodynamics and structural biology of the interaction between preS1 and the EAR domain of gamma2-adaptin. NMR, protein engineering, X-ray crystallography and MS showed that preS1 contains multiple gamma2-EAR-binding motifs that mimic the membrane-trafficking motifs (and binding modes) of host proteins. These motifs localize together to a relatively rigid, functionally important region of preS1, an intrinsically disordered protein. The preS1-gamma2-EAR interaction was relatively weak and efficiently outcompeted by a synthetic peptide. Our data provide the structural road map for developing peptidomimetic antivirals targeting the gamma2-EAR-preS1 interaction.
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==About this Structure==
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The hepatitis B virus preS1 domain hijacks host trafficking proteins by motif mimicry.,Jurgens MC, Voros J, Rautureau GJ, Shepherd DA, Pye VE, Muldoon J, Johnson CM, Ashcroft AE, Freund SM, Ferguson N Nat Chem Biol. 2013 Jul 14. doi: 10.1038/nchembio.1294. PMID:23851574<ref>PMID:23851574</ref>
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[[2ymt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YMT OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<references group="xtra"/><references/>
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</div>
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<div class="pdbe-citations 2ymt" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Adaptin 3D structures|Adaptin 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Ashcroft, A.]]
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[[Category: Large Structures]]
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[[Category: Ferguson, N.]]
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[[Category: Synthetic construct]]
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[[Category: Freund, S M.V.]]
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[[Category: Ashcroft A]]
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[[Category: Johnson, C M.]]
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[[Category: Ferguson N]]
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[[Category: Juergens, M C.]]
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[[Category: Freund SMV]]
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[[Category: Muldoon, J.]]
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[[Category: Johnson CM]]
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[[Category: Pye, V E.]]
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[[Category: Juergens MC]]
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[[Category: Rautureau, G.]]
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[[Category: Muldoon J]]
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[[Category: Shepherd, D.]]
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[[Category: Pye VE]]
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[[Category: Voros, J.]]
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[[Category: Rautureau G]]
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[[Category: Protein transport]]
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[[Category: Shepherd D]]
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[[Category: Voros J]]

Current revision

gamma 2 adaptin EAR domain crystal structure with phage peptide GEEWGPWV

PDB ID 2ymt

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