This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4b9l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:46, 20 December 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='4b9l' size='340' side='right'caption='[[4b9l]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
<StructureSection load='4b9l' size='340' side='right'caption='[[4b9l]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4b9l]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B9L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B9L FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4b9l]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B9L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4B9L FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAX:[(1R,2S,4R)-4-{[6-AMINO-5-(FORMYLAMINO)PYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL]METHYL+DIHYDROGEN+PHOSPHATE'>FAX</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAX:[(1R,2S,4R)-4-{[6-AMINO-5-(FORMYLAMINO)PYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL]METHYL+DIHYDROGEN+PHOSPHATE'>FAX</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2xo7|2xo7]], [[2xy5|2xy5]], [[2xy6|2xy6]], [[2xy7|2xy7]], [[2y1i|2y1i]], [[2y1j|2y1j]], [[4b9m|4b9m]], [[4b9n|4b9n]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4b9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b9l OCA], [https://pdbe.org/4b9l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4b9l RCSB], [https://www.ebi.ac.uk/pdbsum/4b9l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4b9l ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4b9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b9l OCA], [http://pdbe.org/4b9l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4b9l RCSB], [http://www.ebi.ac.uk/pdbsum/4b9l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4b9l ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/E1C9K5_GEOSE E1C9K5_GEOSE]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 21:
==See Also==
==See Also==
-
*[[DNA polymerase|DNA polymerase]]
+
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 12980]]
+
[[Category: Geobacillus stearothermophilus]]
-
[[Category: DNA-directed DNA polymerase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Arnold, S]]
+
[[Category: Arnold S]]
-
[[Category: Carell, T]]
+
[[Category: Carell T]]
-
[[Category: Gehrke, T H]]
+
[[Category: Gehrke TH]]
-
[[Category: Lischke, U]]
+
[[Category: Lischke U]]
-
[[Category: Schneider, S]]
+
[[Category: Schneider S]]
-
[[Category: Dna damage]]
+
-
[[Category: Oxidative dna lesion]]
+
-
[[Category: Replication]]
+
-
[[Category: Trans lesion synthesis]]
+
-
[[Category: Transferase-dna complex]]
+

Current revision

Structure of the high fidelity DNA polymerase I with the oxidative formamidopyrimidine-dA DNA lesion in the pre-insertion site.

PDB ID 4b9l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4b9l"
Personal tools