4cg0
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 4cg0 is ON HOLD Authors: Frankaer, C.G., Moroz, O.V., Turkenburg, J.P., Aspmo, S.I., Thymark, M., Friis, E.P., Stahla, K., Nielsen, J.E., Wilson, K....) |
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- | '''Unreleased structure''' | ||
- | + | ==Savinase crystal structures for combined single crystal diffraction and powder diffraction analysis== | |
+ | <StructureSection load='4cg0' size='340' side='right'caption='[[4cg0]], [[Resolution|resolution]] 1.36Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4cg0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lederbergia_lenta Lederbergia lenta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CG0 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.36Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4cg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cg0 OCA], [https://pdbe.org/4cg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4cg0 RCSB], [https://www.ebi.ac.uk/pdbsum/4cg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4cg0 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/SUBS_LEDLE SUBS_LEDLE] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | A microcrystalline suspension of Bacillus lentus subtilisin (Savinase) produced during industrial large-scale production was analysed by X-ray powder diffraction (XRPD) and X-ray single-crystal diffraction (MX). XRPD established that the bulk microcrystal sample representative of the entire production suspension corresponded to space group P212121, with unit-cell parameters a = 47.65, b = 62.43, c = 75.74 A, equivalent to those for a known orthorhombic crystal form (PDB entry 1ndq). MX using synchrotron beamlines at the Diamond Light Source with beam dimensions of 20 x 20 microm was subsequently used to study the largest crystals present in the suspension, with diffraction data being collected from two single crystals ( approximately 20 x 20 x 60 microm) to resolutions of 1.40 and 1.57 A, respectively. Both structures also belonged to space group P212121, but were quite distinct from the dominant form identified by XRPD, with unit-cell parameters a = 53.04, b = 57.55, c = 71.37 A and a = 52.72, b = 57.13, c = 65.86 A, respectively, and refined to R = 10.8% and Rfree = 15.5% and to R = 14.1% and Rfree = 18.0%, respectively. They are also different from any of the forms previously reported in the PDB. A controlled crystallization experiment with a highly purified Savinase sample allowed the growth of single crystals of the form identified by XRPD; their structure was solved and refined to a resolution of 1.17 A with an R of 9.2% and an Rfree of 11.8%. Thus, there are at least three polymorphs present in the production suspension, albeit with the 1ndq-like microcrystals predominating. It is shown how the two techniques can provide invaluable and complementary information for such a production suspension and it is proposed that XRPD provides an excellent quality-control tool for such suspensions. | ||
- | + | Analysis of an industrial production suspension of Bacillus lentus subtilisin crystals by powder diffraction: a powerful quality-control tool.,Frankaer CG, Moroz OV, Turkenburg JP, Aspmo SI, Thymark M, Friis EP, Stahl K, Nielsen JE, Wilson KS, Harris P Acta Crystallogr D Biol Crystallogr. 2014 Apr 1;70(Pt 4):1115-23. doi:, 10.1107/S1399004714001497. Epub 2014 Mar 21. PMID:24699655<ref>PMID:24699655</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
+ | </div> | ||
+ | <div class="pdbe-citations 4cg0" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Subtilisin 3D structures|Subtilisin 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Lederbergia lenta]] | ||
+ | [[Category: Aspmo SI]] | ||
+ | [[Category: Frankaer CG]] | ||
+ | [[Category: Friis EP]] | ||
+ | [[Category: Harris P]] | ||
+ | [[Category: Moroz OV]] | ||
+ | [[Category: Nielsen JE]] | ||
+ | [[Category: Stahla K]] | ||
+ | [[Category: Thymark M]] | ||
+ | [[Category: Turkenburg JP]] | ||
+ | [[Category: Wilson KS]] |
Current revision
Savinase crystal structures for combined single crystal diffraction and powder diffraction analysis
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Categories: Large Structures | Lederbergia lenta | Aspmo SI | Frankaer CG | Friis EP | Harris P | Moroz OV | Nielsen JE | Stahla K | Thymark M | Turkenburg JP | Wilson KS