This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4ckr
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Crystal structure of the human DDR1 kinase domain in complex with DDR1-IN-1== | ==Crystal structure of the human DDR1 kinase domain in complex with DDR1-IN-1== | ||
| - | <StructureSection load='4ckr' size='340' side='right' caption='[[4ckr]], [[Resolution|resolution]] 2.20Å' scene=''> | + | <StructureSection load='4ckr' size='340' side='right'caption='[[4ckr]], [[Resolution|resolution]] 2.20Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4ckr]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[4ckr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4bki 4bki]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CKR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CKR FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DI1:4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]-N-{4-METHYL-3-[(2-OXO-2,3-DIHYDRO-1H-INDOL-5-YL)OXY]PHENYL}-3-(TRIFLUOROMETHYL)BENZAMIDE'>DI1</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DI1:4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]-N-{4-METHYL-3-[(2-OXO-2,3-DIHYDRO-1H-INDOL-5-YL)OXY]PHENYL}-3-(TRIFLUOROMETHYL)BENZAMIDE'>DI1</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ckr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ckr OCA], [https://pdbe.org/4ckr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ckr RCSB], [https://www.ebi.ac.uk/pdbsum/4ckr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ckr ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/DDR1_HUMAN DDR1_HUMAN] | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 17: | Line 19: | ||
</div> | </div> | ||
<div class="pdbe-citations 4ckr" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 4ckr" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Epithelial discoidin domain-containing receptor|Epithelial discoidin domain-containing receptor]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Homo sapiens]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Arrowsmith | + | [[Category: Arrowsmith CH]] |
| - | [[Category: Bountra | + | [[Category: Bountra C]] |
| - | [[Category: Bullock | + | [[Category: Bullock A]] |
| - | [[Category: Canning | + | [[Category: Canning P]] |
| - | [[Category: Chaikuad | + | [[Category: Chaikuad A]] |
| - | + | [[Category: Dixon-Clarke S]] | |
| - | [[Category: Dixon-Clarke | + | [[Category: Edwards AM]] |
| - | [[Category: Edwards | + | [[Category: Elkins JM]] |
| - | [[Category: Elkins | + | [[Category: Goubin S]] |
| - | [[Category: Goubin | + | [[Category: Krojer T]] |
| - | [[Category: Krojer | + | [[Category: Mahajan P]] |
| - | [[Category: Mahajan | + | [[Category: Newman JA]] |
| - | [[Category: Newman | + | [[Category: Von Delft F]] |
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of the human DDR1 kinase domain in complex with DDR1-IN-1
| |||||||||||
Categories: Homo sapiens | Large Structures | Arrowsmith CH | Bountra C | Bullock A | Canning P | Chaikuad A | Dixon-Clarke S | Edwards AM | Elkins JM | Goubin S | Krojer T | Mahajan P | Newman JA | Von Delft F
