This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4cmd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:12, 20 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==The (R)-selective transaminase from Nectria haematococca==
==The (R)-selective transaminase from Nectria haematococca==
-
<StructureSection load='4cmd' size='340' side='right' caption='[[4cmd]], [[Resolution|resolution]] 1.68&Aring;' scene=''>
+
<StructureSection load='4cmd' size='340' side='right'caption='[[4cmd]], [[Resolution|resolution]] 1.68&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Fusso Fusso]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4CMD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4cmd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Fusarium_vanettenii Fusarium vanettenii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CMD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.68&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Branched-chain-amino-acid_transaminase Branched-chain-amino-acid transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.42 2.6.1.42] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cmd OCA], [http://pdbe.org/4cmd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4cmd RCSB], [http://www.ebi.ac.uk/pdbsum/4cmd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4cmd ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cmd OCA], [https://pdbe.org/4cmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4cmd RCSB], [https://www.ebi.ac.uk/pdbsum/4cmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4cmd ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/C7YVL8_FUSV7 C7YVL8_FUSV7]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 21:
==See Also==
==See Also==
-
*[[Aminotransferase|Aminotransferase]]
+
*[[Aminotransferase 3D structures|Aminotransferase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Branched-chain-amino-acid transaminase]]
+
[[Category: Fusarium vanettenii]]
-
[[Category: Fusso]]
+
[[Category: Large Structures]]
-
[[Category: Hailes, H C]]
+
[[Category: Hailes HC]]
-
[[Category: Isupov, M]]
+
[[Category: Isupov M]]
-
[[Category: Littlechild, J]]
+
[[Category: Littlechild J]]
-
[[Category: Martinez-Torres, R J]]
+
[[Category: Martinez-Torres RJ]]
-
[[Category: Richter, N]]
+
[[Category: Richter N]]
-
[[Category: Sayer, C]]
+
[[Category: Sayer C]]
-
[[Category: Ward, J]]
+
[[Category: Ward J]]
-
[[Category: Transferase]]
+

Current revision

The (R)-selective transaminase from Nectria haematococca

PDB ID 4cmd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools