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| | <StructureSection load='4cqf' size='340' side='right'caption='[[4cqf]], [[Resolution|resolution]] 2.30Å' scene=''> | | <StructureSection load='4cqf' size='340' side='right'caption='[[4cqf]], [[Resolution|resolution]] 2.30Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4cqf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Blood_fluke Blood fluke]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CQF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4CQF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4cqf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Schistosoma_mansoni Schistosoma mansoni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CQF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CQF FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9Z8:6-(2-MERCAPTOACETYLAMINO)-N-PHENYLHEXANAMIDE'>9Z8</scene>, <scene name='pdbligand=DMF:DIMETHYLFORMAMIDE'>DMF</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4cqf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cqf OCA], [http://pdbe.org/4cqf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4cqf RCSB], [http://www.ebi.ac.uk/pdbsum/4cqf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4cqf ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9Z8:6-(2-MERCAPTOACETYLAMINO)-N-PHENYLHEXANAMIDE'>9Z8</scene>, <scene name='pdbligand=DMF:DIMETHYLFORMAMIDE'>DMF</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4cqf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cqf OCA], [https://pdbe.org/4cqf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4cqf RCSB], [https://www.ebi.ac.uk/pdbsum/4cqf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4cqf ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A5H660_SCHMA A5H660_SCHMA] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | | | |
| | ==See Also== | | ==See Also== |
| - | *[[Histone deacetylase|Histone deacetylase]] | + | *[[Histone deacetylase 3D structures|Histone deacetylase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Blood fluke]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Marek, M]] | + | [[Category: Schistosoma mansoni]] |
| - | [[Category: Romier, C]] | + | [[Category: Marek M]] |
| - | [[Category: Epigenetic]] | + | [[Category: Romier C]] |
| - | [[Category: Eukaryote]]
| + | |
| - | [[Category: Histone deacetylase]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Inhibition]]
| + | |
| - | [[Category: Platyhelminth]]
| + | |
| - | [[Category: Structural protein]]
| + | |
| Structural highlights
4cqf is a 4 chain structure with sequence from Schistosoma mansoni. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| | Method: | X-ray diffraction, Resolution 2.3Å |
| Ligands: | , , , , |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
A5H660_SCHMA
Publication Abstract from PubMed
Schistosomiasis, caused by the parasitic flatworm Schistosoma mansoni and related species, is a tropical disease that affects over 200 million people worldwide. A new approach for targeting eukaryotic parasites is to tackle their dynamic epigenetic machinery that is necessary for the extensive phenotypic changes during the life cycle of the parasite. Recently, we identified S. mansoni histone deacetylase 8 (smHDAC8) as a potential target for anti-parasitic therapy. Here we present results on the investigations of a focused set of HDAC inhibitors on smHDAC8. Besides several active hydroxamates, we identified a thiol based inhibitor that inhibited smHDAC8 activity in the micromolar range with unexpected selectivity over the human isotype, which has not been observed so far. The crystal structure of smHDAC8 complexed with the thiol derivative revealed that the inhibitor is accommodated in the catalytic pocket, where it interacts with both the catalytic zinc ion and the essential catalytic tyrosine (Y341) residue via its mercaptoacetamide warhead. To our knowledge, this is the first complex crystal structure of any HDAC inhibited by a mercaptoacetamide inhibitor, and therefore this finding offers a rationale for further improvement. Finally, an ester prodrug of the thiol HDAC inhibitor exhibited anti-parasitic activity on cultured schistosomes in a dose-dependent manner.
Molecular basis for the anti-parasitic activity of a mercaptoacetamide derivative that inhibits histone deacetylase 8 (HDAC8) from the human pathogen Schistosoma mansoni.,Stolfa DA, Marek M, Lancelot J, Hauser AT, Walter A, Leproult E, Melesina J, Rumpf T, Wurtz JM, Cavarelli J, Sippl W, Pierce RJ, Romier C, Jung M J Mol Biol. 2014 Mar 20. pii: S0022-2836(14)00131-4. doi:, 10.1016/j.jmb.2014.03.007. PMID:24657767[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Stolfa DA, Marek M, Lancelot J, Hauser AT, Walter A, Leproult E, Melesina J, Rumpf T, Wurtz JM, Cavarelli J, Sippl W, Pierce RJ, Romier C, Jung M. Molecular basis for the anti-parasitic activity of a mercaptoacetamide derivative that inhibits histone deacetylase 8 (HDAC8) from the human pathogen Schistosoma mansoni. J Mol Biol. 2014 Mar 20. pii: S0022-2836(14)00131-4. doi:, 10.1016/j.jmb.2014.03.007. PMID:24657767 doi:http://dx.doi.org/10.1016/j.jmb.2014.03.007
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