This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1bq8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:21, 27 December 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1bq8' size='340' side='right'caption='[[1bq8]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
<StructureSection load='1bq8' size='340' side='right'caption='[[1bq8]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1bq8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BQ8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1bq8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BQ8 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1caa|1caa]], [[1bq9|1bq9]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bq8 OCA], [https://pdbe.org/1bq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bq8 RCSB], [https://www.ebi.ac.uk/pdbsum/1bq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bq8 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bq8 OCA], [https://pdbe.org/1bq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bq8 RCSB], [https://www.ebi.ac.uk/pdbsum/1bq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bq8 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
+
[https://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 20: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bq8 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bq8 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
 +
==See Also==
 +
*[[Rubredoxin 3D structures|Rubredoxin 3D structures]]
 +
*[[Rubredoxin PDB structures|Rubredoxin PDB structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 43587]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Adams, M W.W]]
+
[[Category: Pyrococcus furiosus]]
-
[[Category: Bau, R]]
+
[[Category: Adams MWW]]
-
[[Category: Eidsness, M K]]
+
[[Category: Bau R]]
-
[[Category: Huang, H]]
+
[[Category: Eidsness MK]]
-
[[Category: Kurtz, D M]]
+
[[Category: Huang H]]
-
[[Category: Rees, D C]]
+
[[Category: Kurtz DM]]
-
[[Category: Scott, R A]]
+
[[Category: Rees DC]]
-
[[Category: High-resolution structure]]
+
[[Category: Scott RA]]
-
[[Category: Iron-sulfur protein]]
+
-
[[Category: Metal binding protein]]
+

Current revision

Rubredoxin (Methionine Mutant) from Pyrococcus Furiosus

PDB ID 1bq8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools