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1c8p

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(New page: 200px<br /> <applet load="1c8p" size="450" color="white" frame="true" align="right" spinBox="true" caption="1c8p" /> '''NMR STRUCTURE OF THE LIGAND BINDING DOMAIN ...)
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[[Image:1c8p.gif|left|200px]]<br />
 
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<applet load="1c8p" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1c8p" />
 
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'''NMR STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE COMMON BETA-CHAIN IN THE GM-CSF, IL-3 AND IL-5 RECEPTORS'''<br />
 
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==Overview==
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==NMR STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE COMMON BETA-CHAIN IN THE GM-CSF, IL-3 AND IL-5 RECEPTORS==
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The haemopoietic cytokines, granulocyte-macrophage colony-stimulating, factor, interleukin-3 and interleukin-5 bind to cell-surface receptors, comprising ligand-specific alpha-chains and a shared beta-chain. The, beta-chain is the critical signalling subunit of the receptor and its, fourth domain not only plays a critical role in interactions with ligands, hence in receptor activation, but also contains residues whose mutation, can lead to ligand-independent activation of the receptor. We have, determined the NMR solution structure of the isolated human fourth domain, of the beta-chain. The protein has a fibronectin type III fold with a, well-defined hydrophobic core and is stabilised by an extensive network of, pi-cation interactions involving Trp and Arg side-chains, including two, Trp residues outside the highly conserved Trp-Ser-Xaa-Trp-Ser motif (where, Xaa is any amino acid) that is found in many cytokine receptors. Most of, the residues implicated in factor-independent mutants localise to the, rigid core of the domain or the pi-cation stack. The loops between the B, and C, and the F and G strands, that contain residues important for, interactions with cytokines, lie adjacent at the membrane-distal end of, the domain, consistent with their being involved cooperatively in binding, cytokines. The elucidation of the structure of the cytokine-binding domain, of the beta-chain provides insight into the cytokine-dependent and, factor-independent activation of the receptor.
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<StructureSection load='1c8p' size='340' side='right'caption='[[1c8p]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1c8p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1d4q 1d4q]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C8P FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c8p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8p OCA], [https://pdbe.org/1c8p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c8p RCSB], [https://www.ebi.ac.uk/pdbsum/1c8p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c8p ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/IL3RB_HUMAN IL3RB_HUMAN] Defects in CSF2RB are the cause of pulmonary surfactant metabolism dysfunction type 5 (SMDP5) [MIM:[https://omim.org/entry/614370 614370]. SMDP5 is a rare lung disorder due to impaired surfactant homeostasis. It is characterized by alveolar filling with floccular material that stains positive using the periodic acid-Schiff method and is derived from surfactant phospholipids and protein components. Excessive lipoproteins accumulation in the alveoli results in severe respiratory distress.<ref>PMID:21075760</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/IL3RB_HUMAN IL3RB_HUMAN] High affinity receptor for interleukin-3, interleukin-5 and granulocyte-macrophage colony-stimulating factor.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/1c8p_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1c8p ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The haemopoietic cytokines, granulocyte-macrophage colony-stimulating factor, interleukin-3 and interleukin-5 bind to cell-surface receptors comprising ligand-specific alpha-chains and a shared beta-chain. The beta-chain is the critical signalling subunit of the receptor and its fourth domain not only plays a critical role in interactions with ligands, hence in receptor activation, but also contains residues whose mutation can lead to ligand-independent activation of the receptor. We have determined the NMR solution structure of the isolated human fourth domain of the beta-chain. The protein has a fibronectin type III fold with a well-defined hydrophobic core and is stabilised by an extensive network of pi-cation interactions involving Trp and Arg side-chains, including two Trp residues outside the highly conserved Trp-Ser-Xaa-Trp-Ser motif (where Xaa is any amino acid) that is found in many cytokine receptors. Most of the residues implicated in factor-independent mutants localise to the rigid core of the domain or the pi-cation stack. The loops between the B and C, and the F and G strands, that contain residues important for interactions with cytokines, lie adjacent at the membrane-distal end of the domain, consistent with their being involved cooperatively in binding cytokines. The elucidation of the structure of the cytokine-binding domain of the beta-chain provides insight into the cytokine-dependent and factor-independent activation of the receptor.
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==About this Structure==
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The solution structure of the cytokine-binding domain of the common beta-chain of the receptors for granulocyte-macrophage colony-stimulating factor, interleukin-3 and interleukin-5.,Mulhern TD, Lopez AF, D'Andrea RJ, Gaunt C, Vandeleur L, Vadas MA, Booker GW, Bagley CJ J Mol Biol. 2000 Apr 7;297(4):989-1001. PMID:10736232<ref>PMID:10736232</ref>
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1C8P is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. This structure superseeds the now removed PDB entry 1D4Q. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1C8P OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The solution structure of the cytokine-binding domain of the common beta-chain of the receptors for granulocyte-macrophage colony-stimulating factor, interleukin-3 and interleukin-5., Mulhern TD, Lopez AF, D'Andrea RJ, Gaunt C, Vandeleur L, Vadas MA, Booker GW, Bagley CJ, J Mol Biol. 2000 Apr 7;297(4):989-1001. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10736232 10736232]
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</div>
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<div class="pdbe-citations 1c8p" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Andrea, R.J.D.]]
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[[Category: Bagley CJ]]
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[[Category: Bagley, C.J.]]
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[[Category: Booker GW]]
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[[Category: Booker, G.W.]]
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[[Category: D'Andrea RJ]]
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[[Category: Gaunt, C.]]
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[[Category: Gaunt C]]
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[[Category: Lopez, A.F.]]
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[[Category: Lopez AF]]
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[[Category: Mulhern, T.D.]]
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[[Category: Mulhern TD]]
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[[Category: Vadas, M.A.]]
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[[Category: Vadas MA]]
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[[Category: Vandeleur, L.]]
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[[Category: Vandeleur L]]
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[[Category: beta sandwich]]
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[[Category: cytokine receptor]]
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[[Category: fn3 domain]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 16:18:22 2007''
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Current revision

NMR STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE COMMON BETA-CHAIN IN THE GM-CSF, IL-3 AND IL-5 RECEPTORS

PDB ID 1c8p

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