This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ixk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:38, 27 December 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ixk.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii==
-
|PDB= 1ixk |SIZE=350|CAPTION= <scene name='initialview01'>1ixk</scene>, resolution 1.9&Aring;
+
<StructureSection load='1ixk' size='340' side='right'caption='[[1ixk]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1ixk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IXK FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
|GENE= PH1374 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 Pyrococcus horikoshii])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ixk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ixk OCA], [https://pdbe.org/1ixk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ixk RCSB], [https://www.ebi.ac.uk/pdbsum/1ixk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ixk ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/O50082_PYRHO O50082_PYRHO]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1IXK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IXK OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ix/1ixk_consurf.spt"</scriptWhenChecked>
-
Crystal structure of human p120 homologue protein PH1374 from Pyrococcus horikoshii., Ishikawa I, Sakai N, Tamura T, Yao M, Watanabe N, Tanaka I, Proteins. 2004 Mar 1;54(4):814-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14997580 14997580]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ixk ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
-
[[Category: Single protein]]
+
[[Category: Ishikawa I]]
-
[[Category: Ishikawa, I.]]
+
[[Category: Sakai N]]
-
[[Category: Sakai, N.]]
+
[[Category: Tamura T]]
-
[[Category: Tamura, T.]]
+
[[Category: Tanaka I]]
-
[[Category: Tanaka, I.]]
+
[[Category: Watanabe N]]
-
[[Category: Watanabe, N.]]
+
[[Category: Yao M]]
-
[[Category: Yao, M.]]
+
-
[[Category: open beta sheet]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 11:56:14 2008''
+

Current revision

Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii

PDB ID 1ixk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools