This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1j1s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:40, 27 December 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1j1s.png|left|200px]]
 
-
<!--
+
==Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin==
-
The line below this paragraph, containing "STRUCTURE_1j1s", creates the "Structure Box" on the page.
+
<StructureSection load='1j1s' size='340' side='right'caption='[[1j1s]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1j1s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phytolacca_americana Phytolacca americana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J1S FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMP:FORMYCIN-5-MONOPHOSPHATE'>FMP</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
{{STRUCTURE_1j1s| PDB=1j1s | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1s OCA], [https://pdbe.org/1j1s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j1s RCSB], [https://www.ebi.ac.uk/pdbsum/1j1s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1s ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RIPS_PHYAM RIPS_PHYAM] Inhibits viral infection of plants, and protein synthesis in vitro.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1s_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j1s ConSurf].
 +
<div style="clear:both"></div>
-
===Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin===
+
==See Also==
-
 
+
*[[Ribosome inactivating protein 3D structures|Ribosome inactivating protein 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1J1S is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Phytolacca_americana Phytolacca americana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1S OCA].
+
[[Category: Large Structures]]
[[Category: Phytolacca americana]]
[[Category: Phytolacca americana]]
-
[[Category: RRNA N-glycosylase]]
+
[[Category: Fujii H]]
-
[[Category: Fujii, H.]]
+
[[Category: Hidaka A]]
-
[[Category: Hidaka, A.]]
+
[[Category: Honjo E]]
-
[[Category: Honjo, E.]]
+
[[Category: Kurokawa H]]
-
[[Category: Kurokawa, H.]]
+
[[Category: Mikami B]]
-
[[Category: Mikami, B.]]
+
[[Category: Monzingo AF]]
-
[[Category: Monzingo, A F.]]
+
[[Category: Motoshima H]]
-
[[Category: Motoshima, H.]]
+
[[Category: Robertus JD]]
-
[[Category: Robertus, J D.]]
+
[[Category: Sato E]]
-
[[Category: Sato, E.]]
+
[[Category: Watanabe K]]
-
[[Category: Watanabe, K.]]
+
-
[[Category: N-glycosidase]]
+
-
[[Category: Pokeweed antiviral protein]]
+
-
[[Category: Ribosome-inactivating protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 04:42:25 2009''
+

Current revision

Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin

PDB ID 1j1s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1j1s"
Personal tools