This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1v4a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:57, 27 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure of the N-terminal Domain of Escherichia coli Glutamine Synthetase adenylyltransferase==
==Structure of the N-terminal Domain of Escherichia coli Glutamine Synthetase adenylyltransferase==
-
<StructureSection load='1v4a' size='340' side='right' caption='[[1v4a]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='1v4a' size='340' side='right'caption='[[1v4a]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1v4a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V4A FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1v4a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V4A FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/[Glutamate--ammonia-ligase]_adenylyltransferase [Glutamate--ammonia-ligase] adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.42 2.7.7.42] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4a OCA], [http://pdbe.org/1v4a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v4a RCSB], [http://www.ebi.ac.uk/pdbsum/1v4a PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4a OCA], [https://pdbe.org/1v4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v4a RCSB], [https://www.ebi.ac.uk/pdbsum/1v4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v4a ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/GLNE_ECOLI GLNE_ECOLI]] Adenylation and deadenylation of glutamate--ammonia ligase.<ref>PMID:8412694</ref>
+
[https://www.uniprot.org/uniprot/GLNE_ECOLI GLNE_ECOLI] Adenylation and deadenylation of glutamate--ammonia ligase.<ref>PMID:8412694</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/1v4a_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/1v4a_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v4a ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: Carr, P D]]
+
[[Category: Large Structures]]
-
[[Category: Joachimiak, A]]
+
[[Category: Carr PD]]
-
[[Category: Ollis, D L]]
+
[[Category: Joachimiak A]]
-
[[Category: Vasudevan, S G]]
+
[[Category: Ollis DL]]
-
[[Category: Xu, Y]]
+
[[Category: Vasudevan SG]]
-
[[Category: Zhang, R]]
+
[[Category: Xu Y]]
-
[[Category: Dna polymerase beta motif]]
+
[[Category: Zhang R]]
-
[[Category: Main alpha helix]]
+
-
[[Category: Transferase]]
+

Current revision

Structure of the N-terminal Domain of Escherichia coli Glutamine Synthetase adenylyltransferase

PDB ID 1v4a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1v4a"
Personal tools