This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1v4p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:57, 27 December 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='1v4p' size='340' side='right'caption='[[1v4p]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
<StructureSection load='1v4p' size='340' side='right'caption='[[1v4p]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1v4p]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V4P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1v4p]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V4P FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine--tRNA_ligase Alanine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.7 6.1.1.7] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4p OCA], [http://pdbe.org/1v4p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v4p RCSB], [http://www.ebi.ac.uk/pdbsum/1v4p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v4p ProSAT], [http://www.topsan.org/Proteins/RSGI/1v4p TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4p OCA], [https://pdbe.org/1v4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v4p RCSB], [https://www.ebi.ac.uk/pdbsum/1v4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v4p ProSAT], [https://www.topsan.org/Proteins/RSGI/1v4p TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/ALAXS_PYRHO ALAXS_PYRHO]] Functions in trans to edit the amino acid moiety from mischarged charged Ser-tRNA(Ala). Has little activity against Gly-tRNA(Ala).
+
[https://www.uniprot.org/uniprot/ALAXS_PYRHO ALAXS_PYRHO] Functions in trans to edit the amino acid moiety from mischarged charged Ser-tRNA(Ala). Has little activity against Gly-tRNA(Ala).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 25: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pyrococcus shinkaii]]
 
-
[[Category: Alanine--tRNA ligase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Ishijima, J]]
 
-
[[Category: Structural genomic]]
 
-
[[Category: Yutani, K]]
 
-
[[Category: Alanine-trna ligase]]
 
-
[[Category: Alanyl-trna synthetase]]
 
-
[[Category: Ligase]]
 
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
-
[[Category: Rsgi]]
+
[[Category: Ishijima J]]
 +
[[Category: Yutani K]]

Current revision

Crystal structure of Alanyl-tRNA Synthetase from Pyrococcus horikoshii OT3

PDB ID 1v4p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools