This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1v5j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:57, 27 December 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1v5j.jpg|left|200px]]<br /><applet load="1v5j" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1v5j" />
 
-
'''Solution Structure of RSGI RUH-008, fn3 domain in Human cDNA'''<br />
 
-
==About this Structure==
+
==Solution Structure of RSGI RUH-008, fn3 domain in Human cDNA==
-
1V5J is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V5J OCA].
+
<StructureSection load='1v5j' size='340' side='right'caption='[[1v5j]]' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1v5j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V5J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V5J FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v5j OCA], [https://pdbe.org/1v5j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v5j RCSB], [https://www.ebi.ac.uk/pdbsum/1v5j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v5j ProSAT], [https://www.topsan.org/Proteins/RSGI/1v5j TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TUTLA_HUMAN TUTLA_HUMAN] Functions in dendrite outgrowth and synapse maturation.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v5/1v5j_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v5j ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Doi-Katayama, Y.]]
+
[[Category: Doi-Katayama Y]]
-
[[Category: Hayashi, F.]]
+
[[Category: Hayashi F]]
-
[[Category: Hirota, H.]]
+
[[Category: Hirota H]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Yokoyama S]]
-
[[Category: Yokoyama, S.]]
+
-
[[Category: fn3 domain]]
+
-
[[Category: human cdna]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomics]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:31:44 2008''
+

Current revision

Solution Structure of RSGI RUH-008, fn3 domain in Human cDNA

PDB ID 1v5j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools