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1vat
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1vat" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vat, resolution 1.6Å" /> '''Iodine derivative of ...) |
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| - | [[Image:1vat.gif|left|200px]]<br /><applet load="1vat" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1vat, resolution 1.6Å" /> | ||
| - | '''Iodine derivative of hen egg-white lysozyme'''<br /> | ||
| - | == | + | ==Iodine derivative of hen egg-white lysozyme== |
| - | + | <StructureSection load='1vat' size='340' side='right'caption='[[1vat]], [[Resolution|resolution]] 1.60Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | + | <table><tr><td colspan='2'>[[1vat]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VAT FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vat OCA], [https://pdbe.org/1vat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vat RCSB], [https://www.ebi.ac.uk/pdbsum/1vat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vat ProSAT], [https://www.topsan.org/Proteins/RSGI/1vat TOPSAN]</span></td></tr> | |
| - | [ | + | </table> |
| - | [ | + | == Function == |
| - | [ | + | [https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref> |
| - | [ | + | == Evolutionary Conservation == |
| - | [[ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | [ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/1vat_consurf.spt"</scriptWhenChecked> |
| - | [[ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vat ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Lysozyme 3D structures|Lysozyme 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Gallus gallus]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Kamiya N]] | ||
| + | [[Category: Kawamoto M]] | ||
| + | [[Category: Miki K]] | ||
| + | [[Category: Miyatake H]] | ||
| + | [[Category: Park SY]] | ||
| + | [[Category: Takeda K]] | ||
Current revision
Iodine derivative of hen egg-white lysozyme
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Categories: Gallus gallus | Large Structures | Kamiya N | Kawamoto M | Miki K | Miyatake H | Park SY | Takeda K
