1vav

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:00, 28 December 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution==
==Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution==
-
<StructureSection load='1vav' size='340' side='right' caption='[[1vav]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='1vav' size='340' side='right'caption='[[1vav]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1vav]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VAV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VAV FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1vav]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VAV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VAV FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vav OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vav RCSB], [http://www.ebi.ac.uk/pdbsum/1vav PDBsum]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<table>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vav OCA], [https://pdbe.org/1vav PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vav RCSB], [https://www.ebi.ac.uk/pdbsum/1vav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vav ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9I4H0_PSEAE Q9I4H0_PSEAE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/1vav_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/1vav_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vav ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 23: Line 27:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 1vav" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pseudomonas aeruginosa]]
+
[[Category: Large Structures]]
-
[[Category: Hashimoto, W.]]
+
[[Category: Pseudomonas aeruginosa PAO1]]
-
[[Category: Mikami, B.]]
+
[[Category: Hashimoto W]]
-
[[Category: Miyake, O.]]
+
[[Category: Mikami B]]
-
[[Category: Moriwaki, S.]]
+
[[Category: Miyake O]]
-
[[Category: Murata, K.]]
+
[[Category: Moriwaki S]]
-
[[Category: Yamasaki, M.]]
+
[[Category: Murata K]]
-
[[Category: Beta-sandwich]]
+
[[Category: Yamasaki M]]
-
[[Category: Lyase]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution

PDB ID 1vav

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools