This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1vbl
From Proteopedia
(Difference between revisions)
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_1vbl| PDB=1vbl | SCENE= }} | ||
| - | ===Structure of the thermostable pectate lyase PL 47=== | ||
| - | == | + | ==Structure of the thermostable pectate lyase PL 47== |
| - | [[1vbl]] is a 1 chain structure with sequence from [ | + | <StructureSection load='1vbl' size='340' side='right'caption='[[1vbl]], [[Resolution|resolution]] 1.91Å' scene=''> |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[1vbl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._TS-47 Bacillus sp. TS-47]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VBL FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91Å</td></tr> |
| - | [ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vbl OCA], [https://pdbe.org/1vbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vbl RCSB], [https://www.ebi.ac.uk/pdbsum/1vbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vbl ProSAT]</span></td></tr> |
| - | [[ | + | </table> |
| - | [ | + | == Function == |
| - | [[Category: | + | [https://www.uniprot.org/uniprot/Q9AJM4_9BACI Q9AJM4_9BACI] |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/1vbl_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vbl ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Bacillus sp. TS-47]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Kitatani T]] | ||
| + | [[Category: Nakaniwa T]] | ||
| + | [[Category: Nishimura K]] | ||
| + | [[Category: Sakai T]] | ||
| + | [[Category: Tada T]] | ||
| + | [[Category: Takao M]] | ||
| + | [[Category: Yamaguchi A]] | ||
Current revision
Structure of the thermostable pectate lyase PL 47
| |||||||||||
