This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vck

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:01, 28 December 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10==
==Crystal structure of ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10==
-
<StructureSection load='1vck' size='340' side='right' caption='[[1vck]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='1vck' size='340' side='right'caption='[[1vck]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1vck]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VCK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VCK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1vck]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VCK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VCK FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=H2S:HYDROSULFURIC+ACID'>H2S</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vck FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vck OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vck RCSB], [http://www.ebi.ac.uk/pdbsum/1vck PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=H2S:HYDROSULFURIC+ACID'>H2S</scene></td></tr>
-
<table>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vck FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vck OCA], [https://pdbe.org/1vck PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vck RCSB], [https://www.ebi.ac.uk/pdbsum/1vck PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vck ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CARAC_PSERE CARAC_PSERE] Part of the multicomponent carbazole 1,9a-dioxygenase (CARDO), that converts carbazole (CAR) into 2-aminobiphenyl-2,3-diol. Acts as a mediator in the electron transfer from CarAd to CarAa.<ref>PMID:9244274</ref> <ref>PMID:12450807</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vc/1vck_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vc/1vck_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vck ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 1vck" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Dioxygenase|Dioxygenase]]
+
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
-
*[[Ferredoxin|Ferredoxin]]
+
*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas resinovorans]]
[[Category: Pseudomonas resinovorans]]
-
[[Category: Fujiomoto, Z.]]
+
[[Category: Fujiomoto Z]]
-
[[Category: Fushinobu, S.]]
+
[[Category: Fushinobu S]]
-
[[Category: Habe, H.]]
+
[[Category: Habe H]]
-
[[Category: Iwata, K.]]
+
[[Category: Iwata K]]
-
[[Category: Kobashi, N.]]
+
[[Category: Kobashi N]]
-
[[Category: Mizuno, H.]]
+
[[Category: Mizuno H]]
-
[[Category: Nam, J W.]]
+
[[Category: Nam J-W]]
-
[[Category: Noguchi, H.]]
+
[[Category: Noguchi H]]
-
[[Category: Nojiri, H.]]
+
[[Category: Nojiri H]]
-
[[Category: Omori, T.]]
+
[[Category: Omori T]]
-
[[Category: Yamane, H.]]
+
[[Category: Yamane H]]
-
[[Category: Yoshida, T.]]
+
[[Category: Yoshida T]]
-
[[Category: 9a-dioxygenase]]
+
-
[[Category: Angular dioxygenase]]
+
-
[[Category: Carac]]
+
-
[[Category: Carbazole 1]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Pseudomonas resinovorans strain ca10]]
+
-
[[Category: Rieske non-heme iron oxygenase system]]
+
-
[[Category: Rieske-type ferredoxin]]
+

Current revision

Crystal structure of ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10

PDB ID 1vck

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1vck"
Personal tools