This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1vdz
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='1vdz' size='340' side='right'caption='[[1vdz]], [[Resolution|resolution]] 2.55Å' scene=''> | <StructureSection load='1vdz' size='340' side='right'caption='[[1vdz]], [[Resolution|resolution]] 2.55Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1vdz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1vdz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDZ FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdz OCA], [https://pdbe.org/1vdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdz RCSB], [https://www.ebi.ac.uk/pdbsum/1vdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdz ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdz OCA], [https://pdbe.org/1vdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdz RCSB], [https://www.ebi.ac.uk/pdbsum/1vdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdz ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 25: | Line 25: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Pyrococcus shinkaii]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Maegawa | + | [[Category: Pyrococcus horikoshii]] |
| - | [[Category: Morita | + | [[Category: Maegawa Y]] |
| - | [[Category: Tanaka | + | [[Category: Morita H]] |
| - | [[Category: Watanabe | + | [[Category: Tanaka I]] |
| - | [[Category: Yao | + | [[Category: Watanabe N]] |
| - | + | [[Category: Yao M]] | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3
| |||||||||||
