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1vek

From Proteopedia

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[[Image:1vek.jpg|left|200px]]
 
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==Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA==
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The line below this paragraph, containing "STRUCTURE_1vek", creates the "Structure Box" on the page.
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<StructureSection load='1vek' size='340' side='right'caption='[[1vek]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1vek]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VEK FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vek OCA], [https://pdbe.org/1vek PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vek RCSB], [https://www.ebi.ac.uk/pdbsum/1vek PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vek ProSAT], [https://www.topsan.org/Proteins/RSGI/1vek TOPSAN]</span></td></tr>
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{{STRUCTURE_1vek| PDB=1vek | SCENE= }}
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</table>
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== Function ==
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'''Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA'''
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[https://www.uniprot.org/uniprot/UBP14_ARATH UBP14_ARATH] Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development.<ref>PMID:11576424</ref> <ref>PMID:11788751</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==About this Structure==
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Check<jmol>
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1VEK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEK OCA].
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ve/1vek_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vek ConSurf].
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<div style="clear:both"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Abe, T.]]
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[[Category: Abe T]]
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[[Category: Higuchi, Y.]]
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[[Category: Higuchi Y]]
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[[Category: Hirota, H.]]
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[[Category: Hirota H]]
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[[Category: Kigawa, T.]]
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[[Category: Kigawa T]]
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[[Category: Koshiba, S.]]
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[[Category: Koshiba S]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: Saito K]]
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[[Category: Saito, K.]]
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[[Category: Yokoyama S]]
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[[Category: Yokoyama, S.]]
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[[Category: Riken structural genomics/proteomics initiative]]
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[[Category: Rsgi]]
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[[Category: Structural genomic]]
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[[Category: Three helix bundle]]
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[[Category: Uba domain]]
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[[Category: Ubiquitin associated domain]]
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[[Category: Ubiquitin specific protease 14]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 12:27:05 2008''
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Current revision

Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA

PDB ID 1vek

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