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1vji

From Proteopedia

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[[Image:1vji.gif|left|200px]]
 
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{{Structure
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==Gene Product of At1g76680 from Arabidopsis thaliana==
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|PDB= 1vji |SIZE=350|CAPTION= <scene name='initialview01'>1vji</scene>, resolution 2.003&Aring;
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<StructureSection load='1vji' size='340' side='right'caption='[[1vji]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:Fmn+Binding+Site+For+Residue+A+373'>AC1</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>
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<table><tr><td colspan='2'>[[1vji]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VJI FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.003&#8491;</td></tr>
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|GENE= At1g76680 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vji OCA], [https://pdbe.org/1vji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vji RCSB], [https://www.ebi.ac.uk/pdbsum/1vji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vji ProSAT], [https://www.topsan.org/Proteins/CESG/1vji TOPSAN]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vji OCA], [http://www.ebi.ac.uk/pdbsum/1vji PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1vji RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/OPR1_ARATH OPR1_ARATH] Specifically cleaves olefinic bonds in alpha,beta-unsaturated carbonyls and may be involved in detoxification or modification of these reactive compounds. May be involved in the biosynthesis or metabolism of oxylipin signaling molecules. In vitro, reduces 9R,13R-12-oxophyodienoic acid (9R,13R-OPDA) to 9R,13R-OPC-8:0, but only poorly 9S,13S-OPDA, the natural precursor of jasmonic acid. Can detoxify the explosive 2,4,6-trinitrotoluene (TNT) in vitro and in vivo by catalyzing its nitroreduction to form hydroxylamino-dinitrotoluene (HADNT).<ref>PMID:19605548</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vj/1vji_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vji ConSurf].
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<div style="clear:both"></div>
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'''Gene Product of At1g76680 from Arabidopsis thaliana'''
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==See Also==
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*[[12-oxophytodienoate reductase 3D structures|12-oxophytodienoate reductase 3D structures]]
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== References ==
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==About this Structure==
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<references/>
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1VJI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VJI OCA].
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__TOC__
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</StructureSection>
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==Reference==
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X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1., Fox BG, Malone TE, Johnson KA, Madson SE, Aceti D, Bingman CA, Blommel PG, Buchan B, Burns B, Cao J, Cornilescu C, Doreleijers J, Ellefson J, Frederick R, Geetha H, Hruby D, Jeon WB, Kimball T, Kunert J, Markley JL, Newman C, Olson A, Peterson FC, Phillips GN Jr, Primm J, Ramirez B, Rosenberg NS, Runnels M, Seder K, Shaw J, Smith DW, Sreenath H, Song J, Sussman MR, Thao S, Troestler D, Tyler E, Tyler R, Ulrich E, Vinarov D, Vojtik F, Volkman BF, Wesenberg G, Wrobel RL, Zhang J, Zhao Q, Zolnai Z, Proteins. 2005 Oct 1;61(1):206-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16080145 16080145]
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[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Bingman, C A.]]
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[[Category: Bingman CA]]
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[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
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[[Category: Johnson KA]]
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[[Category: Johnson, K A.]]
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[[Category: Phillips Jr GN]]
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[[Category: Jr., G N.Phillips.]]
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[[Category: Smith DW]]
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[[Category: Smith, D W.]]
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[[Category: Wesenberg GE]]
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[[Category: Wesenberg, G E.]]
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[[Category: arabidopsis thaliana]]
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[[Category: center for eukaryotic structural genomic]]
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[[Category: cesg]]
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[[Category: plant protein]]
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[[Category: protein structure initiative]]
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[[Category: structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:25:19 2008''
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Current revision

Gene Product of At1g76680 from Arabidopsis thaliana

PDB ID 1vji

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