This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1vkc
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Putative acetyl transferase from Pyrococcus furiosus== | ==Putative acetyl transferase from Pyrococcus furiosus== | ||
| - | <StructureSection load='1vkc' size='340' side='right' caption='[[1vkc]], [[Resolution|resolution]] 1.89Å' scene=''> | + | <StructureSection load='1vkc' size='340' side='right'caption='[[1vkc]], [[Resolution|resolution]] 1.89Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1vkc]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1vkc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VKC FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vkc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vkc OCA], [https://pdbe.org/1vkc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vkc RCSB], [https://www.ebi.ac.uk/pdbsum/1vkc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vkc ProSAT], [https://www.topsan.org/Proteins/SECSG/1vkc TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q8U4Q2_PYRFU Q8U4Q2_PYRFU] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/1vkc_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/1vkc_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vkc ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Pyrococcus furiosus]] | [[Category: Pyrococcus furiosus]] | ||
| - | [[Category: | + | [[Category: Adams MWW]] |
| - | [[Category: | + | [[Category: Brereton PS]] |
| + | [[Category: Habel JE]] | ||
| + | [[Category: Izumi M]] | ||
| + | [[Category: Jenney Jr FE]] | ||
| + | [[Category: Liu Z-J]] | ||
| + | [[Category: Poole II FL]] | ||
| + | [[Category: Richardson DC]] | ||
| + | [[Category: Richardson JS]] | ||
| + | [[Category: Rose JP]] | ||
| + | [[Category: Shah C]] | ||
| + | [[Category: Sugar FJ]] | ||
| + | [[Category: Tempel W]] | ||
| + | [[Category: Wang B-C]] | ||
Current revision
Putative acetyl transferase from Pyrococcus furiosus
| |||||||||||
Categories: Large Structures | Pyrococcus furiosus | Adams MWW | Brereton PS | Habel JE | Izumi M | Jenney Jr FE | Liu Z-J | Poole II FL | Richardson DC | Richardson JS | Rose JP | Shah C | Sugar FJ | Tempel W | Wang B-C
