This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vme

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1vme" [edit=sysop:move=sysop])
Current revision (00:04, 28 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vme.png|left|200px]]
 
-
{{STRUCTURE_1vme| PDB=1vme | SCENE= }}
+
==Crystal structure of Flavoprotein (TM0755) from Thermotoga maritima at 1.80 A resolution==
-
 
+
<StructureSection load='1vme' size='340' side='right'caption='[[1vme]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===Crystal structure of Flavoprotein (TM0755) from Thermotoga maritima at 1.80 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1vme]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VME OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VME FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FEO:MU-OXO-DIIRON'>FEO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[1vme]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VME OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vme OCA], [https://pdbe.org/1vme PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vme RCSB], [https://www.ebi.ac.uk/pdbsum/1vme PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vme ProSAT], [https://www.topsan.org/Proteins/JCSG/1vme TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9WZL4_THEMA Q9WZL4_THEMA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/1vme_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vme ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
 
-
[[Category: Electron transport]]
 
-
[[Category: Flavoprotein]]
 
-
[[Category: Jcsg]]
 
-
[[Category: Joint center for structural genomic]]
 
-
[[Category: Protein structure initiative]]
 
-
[[Category: Psi]]
 
-
[[Category: Structural genomic]]
 
-
[[Category: Tm0755]]
 

Current revision

Crystal structure of Flavoprotein (TM0755) from Thermotoga maritima at 1.80 A resolution

PDB ID 1vme

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools