This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2np5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:09, 28 December 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2np5.png|left|200px]]
 
-
<!--
+
==Crystal structure of a transcriptional regulator (RHA1_ro04179) from Rhodococcus sp. Rha1.==
-
The line below this paragraph, containing "STRUCTURE_2np5", creates the "Structure Box" on the page.
+
<StructureSection load='2np5' size='340' side='right'caption='[[2np5]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2np5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NP5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NP5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NDS:ETHYL+DIMETHYL+AMMONIO+PROPANE+SULFONATE'>NDS</scene></td></tr>
-
{{STRUCTURE_2np5| PDB=2np5 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2np5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2np5 OCA], [https://pdbe.org/2np5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2np5 RCSB], [https://www.ebi.ac.uk/pdbsum/2np5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2np5 ProSAT], [https://www.topsan.org/Proteins/MCSG/2np5 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of a transcriptional regulator (RHA1_ro04179) from Rhodococcus sp. Rha1.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q0S914_RHOJR Q0S914_RHOJR]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2NP5 is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Rhodococcus_jostii_rha1 Rhodococcus jostii rha1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NP5 OCA].
+
Check<jmol>
-
[[Category: Rhodococcus jostii rha1]]
+
<jmolCheckbox>
-
[[Category: Chruszcz, M.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/2np5_consurf.spt"</scriptWhenChecked>
-
[[Category: Cymborowski, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Edwards, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Evdokimova, E.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2np5 ConSurf].
-
[[Category: Kagan, O.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Minor, W.]]
+
</StructureSection>
-
[[Category: Savchenko, A.]]
+
[[Category: Large Structures]]
-
[[Category: Mcsg]]
+
[[Category: Rhodococcus jostii RHA1]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Chruszcz M]]
-
[[Category: Protein structure initiative]]
+
[[Category: Cymborowski M]]
-
[[Category: Psi-2]]
+
[[Category: Edwards A]]
-
[[Category: Structural genomic]]
+
[[Category: Evdokimova E]]
-
[[Category: Tetr family]]
+
[[Category: Joachimiak A]]
-
[[Category: Transcription]]
+
[[Category: Kagan O]]
-
[[Category: Transcriptional regulator]]
+
[[Category: Minor W]]
-
 
+
[[Category: Savchenko A]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 21 09:55:10 2010''
+

Current revision

Crystal structure of a transcriptional regulator (RHA1_ro04179) from Rhodococcus sp. Rha1.

PDB ID 2np5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2np5"
Personal tools