This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ood
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2ood" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ood, resolution 2.62Å" /> '''Crystal structure of...) |
|||
| (15 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2ood.gif|left|200px]]<br /><applet load="2ood" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2ood, resolution 2.62Å" /> | ||
| - | '''Crystal structure of guanine deaminase from Bradyrhizobium japonicum'''<br /> | ||
| - | == | + | ==Crystal structure of guanine deaminase from Bradyrhizobium japonicum== |
| - | + | <StructureSection load='2ood' size='340' side='right'caption='[[2ood]], [[Resolution|resolution]] 2.62Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | + | <table><tr><td colspan='2'>[[2ood]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bradyrhizobium_diazoefficiens_USDA_110 Bradyrhizobium diazoefficiens USDA 110]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OOD FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.62Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GUN:GUANINE'>GUN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ood FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ood OCA], [https://pdbe.org/2ood PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ood RCSB], [https://www.ebi.ac.uk/pdbsum/2ood PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ood ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ood TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | [ | + | == Function == |
| - | [ | + | [https://www.uniprot.org/uniprot/Q89NG0_BRADU Q89NG0_BRADU] |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | [ | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | [[ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2ood_consurf.spt"</scriptWhenChecked> |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | + | </jmolCheckbox> | |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ood ConSurf]. |
| - | [[ | + | <div style="clear:both"></div> |
| - | [ | + | |
| - | + | ==See Also== | |
| + | *[[Deaminase 3D structures|Deaminase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Bradyrhizobium diazoefficiens USDA 110]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Agarwal R]] | ||
| + | [[Category: Burley SK]] | ||
| + | [[Category: Swaminathan S]] | ||
Current revision
Crystal structure of guanine deaminase from Bradyrhizobium japonicum
| |||||||||||
