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2ood

From Proteopedia

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[[Image:2ood.gif|left|200px]]
 
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{{Structure
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==Crystal structure of guanine deaminase from Bradyrhizobium japonicum==
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|PDB= 2ood |SIZE=350|CAPTION= <scene name='initialview01'>2ood</scene>, resolution 2.62&Aring;
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<StructureSection load='2ood' size='340' side='right'caption='[[2ood]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> and <scene name='pdbligand=GUN:GUANINE'>GUN</scene>
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<table><tr><td colspan='2'>[[2ood]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bradyrhizobium_diazoefficiens_USDA_110 Bradyrhizobium diazoefficiens USDA 110]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OOD FirstGlance]. <br>
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|ACTIVITY= [http://en.wikipedia.org/wiki/Guanine_deaminase Guanine deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.3 3.5.4.3]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.62&#8491;</td></tr>
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|GENE= bII3846, blr3880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 Bradyrhizobium japonicum])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GUN:GUANINE'>GUN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ood FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ood OCA], [https://pdbe.org/2ood PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ood RCSB], [https://www.ebi.ac.uk/pdbsum/2ood PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ood ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ood TOPSAN]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q89NG0_BRADU Q89NG0_BRADU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2ood_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ood ConSurf].
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<div style="clear:both"></div>
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'''Crystal structure of guanine deaminase from Bradyrhizobium japonicum'''
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==See Also==
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*[[Deaminase 3D structures|Deaminase 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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2OOD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOD OCA].
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[[Category: Bradyrhizobium diazoefficiens USDA 110]]
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[[Category: Bradyrhizobium japonicum]]
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[[Category: Large Structures]]
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[[Category: Guanine deaminase]]
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[[Category: Agarwal R]]
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[[Category: Single protein]]
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[[Category: Burley SK]]
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[[Category: Agarwal, R.]]
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[[Category: Swaminathan S]]
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[[Category: Burley, S K.]]
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[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
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[[Category: Swaminathan, S.]]
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[[Category: GUN]]
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[[Category: ZN]]
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[[Category: 9231a]]
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[[Category: crystal structure]]
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[[Category: guanine]]
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[[Category: guanine deaminase]]
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[[Category: new york structural genomix research consortium]]
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[[Category: nysgxrc]]
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[[Category: protein structure initiative]]
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[[Category: psi-2]]
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[[Category: psi-ii]]
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[[Category: structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:02:22 2008''
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Current revision

Crystal structure of guanine deaminase from Bradyrhizobium japonicum

PDB ID 2ood

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