This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2tep

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:22, 28 December 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2tep.jpg|left|200px]]
 
-
<!--
+
==PEANUT LECTIN COMPLEXED WITH T-ANTIGENIC DISACCHARIDE==
-
The line below this paragraph, containing "STRUCTURE_2tep", creates the "Structure Box" on the page.
+
<StructureSection load='2tep' size='340' side='right'caption='[[2tep]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2tep]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1tep 1tep]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2TEP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2TEP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>
-
{{STRUCTURE_2tep| PDB=2tep | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2tep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2tep OCA], [https://pdbe.org/2tep PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2tep RCSB], [https://www.ebi.ac.uk/pdbsum/2tep PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2tep ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY] D-galactose specific lectin.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/te/2tep_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2tep ConSurf].
 +
<div style="clear:both"></div>
-
'''PEANUT LECTIN COMPLEXED WITH T-ANTIGENIC DISACCHARIDE'''
+
==See Also==
-
 
+
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
-
 
+
*[[Galactose-binding lectin|Galactose-binding lectin]]
-
==About this Structure==
+
__TOC__
-
2TEP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1tep 1tep]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2TEP OCA].
+
</StructureSection>
[[Category: Arachis hypogaea]]
[[Category: Arachis hypogaea]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Ravindran, M.]]
+
[[Category: Ravindran M]]
-
[[Category: Ravishankar, R.]]
+
[[Category: Ravishankar R]]
-
[[Category: Suguna, K.]]
+
[[Category: Suguna K]]
-
[[Category: Surolia, A.]]
+
[[Category: Surolia A]]
-
[[Category: Vijayan, M.]]
+
[[Category: Vijayan M]]
-
[[Category: Agglutinin]]
+
-
[[Category: Carbohydrate specificity]]
+
-
[[Category: Lectin]]
+
-
[[Category: Legume lectin]]
+
-
[[Category: Protein crystallography]]
+
-
[[Category: T-antigen]]
+
-
[[Category: Water bridge]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 17:23:26 2008''
+

Current revision

PEANUT LECTIN COMPLEXED WITH T-ANTIGENIC DISACCHARIDE

PDB ID 2tep

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2tep"
Personal tools