This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ey7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ey7" [edit=sysop:move=sysop])
Current revision (00:26, 28 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ey7.png|left|200px]]
 
-
{{STRUCTURE_3ey7| PDB=3ey7 | SCENE= }}
+
==Structure from the mobile metagenome of V. Cholerae. Integron cassette protein VCH_CASS1==
-
 
+
<StructureSection load='3ey7' size='340' side='right'caption='[[3ey7]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
===Structure from the mobile metagenome of V. Cholerae. Integron cassette protein VCH_CASS1===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3ey7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EY7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EY7 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3ey7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EY7 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ey7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ey7 OCA], [https://pdbe.org/3ey7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ey7 RCSB], [https://www.ebi.ac.uk/pdbsum/3ey7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ey7 ProSAT], [https://www.topsan.org/Proteins/MCSG/3ey7 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9K3D3_VIBCH Q9K3D3_VIBCH]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ey/3ey7_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ey7 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Vibrio cholerae]]
[[Category: Vibrio cholerae]]
-
[[Category: Boucher, Y.]]
+
[[Category: Boucher Y]]
-
[[Category: Chang, C.]]
+
[[Category: Chang C]]
-
[[Category: Cui, H.]]
+
[[Category: Cui H]]
-
[[Category: Curmi, P M.G.]]
+
[[Category: Curmi PMG]]
-
[[Category: Deshpande, C N.]]
+
[[Category: Deshpande CN]]
-
[[Category: Edwards, A.]]
+
[[Category: Edwards A]]
-
[[Category: Harrop, S J.]]
+
[[Category: Harrop SJ]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Mabbutt BC]]
-
[[Category: Mabbutt, B C.]]
+
[[Category: Savchenko A]]
-
[[Category: Savchenko, A.]]
+
[[Category: Sureshan V]]
-
[[Category: Sureshan, V.]]
+
[[Category: Xu X]]
-
[[Category: Xu, X.]]
+
-
[[Category: Dioxygenase]]
+
-
[[Category: Integron cassette protein mobile metagenome structural genomic]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Midwest center for structural genomic]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+

Current revision

Structure from the mobile metagenome of V. Cholerae. Integron cassette protein VCH_CASS1

PDB ID 3ey7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ey7"
Personal tools