This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3f4l
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of a probable oxidoreductase yhhX in Triclinic form. Northeast Structural Genomics target ER647== | ==Crystal structure of a probable oxidoreductase yhhX in Triclinic form. Northeast Structural Genomics target ER647== | ||
| - | <StructureSection load='3f4l' size='340' side='right' caption='[[3f4l]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='3f4l' size='340' side='right'caption='[[3f4l]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3f4l]] is a 6 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3f4l]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F4L FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4l OCA], [https://pdbe.org/3f4l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f4l RCSB], [https://www.ebi.ac.uk/pdbsum/3f4l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f4l ProSAT], [https://www.topsan.org/Proteins/NESGC/3f4l TOPSAN]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/YHHX_ECOLI YHHX_ECOLI] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f4/3f4l_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f4/3f4l_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 19: | Line 22: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Escherichia coli K-12]] |
| - | [[Category: Abashidze | + | [[Category: Large Structures]] |
| - | [[Category: Acton | + | [[Category: Abashidze M]] |
| - | [[Category: Everett | + | [[Category: Acton TB]] |
| - | [[Category: Foote | + | [[Category: Everett JK]] |
| - | [[Category: Hunt | + | [[Category: Foote EL]] |
| - | [[Category: Janjua | + | [[Category: Hunt JF]] |
| - | [[Category: Montelione | + | [[Category: Janjua H]] |
| - | + | [[Category: Montelione GT]] | |
| - | [[Category: Nair | + | [[Category: Nair R]] |
| - | [[Category: Rost | + | [[Category: Rost B]] |
| - | [[Category: Seetharaman | + | [[Category: Seetharaman J]] |
| - | [[Category: Tong | + | [[Category: Tong L]] |
| - | [[Category: Wang | + | [[Category: Wang H]] |
| - | [[Category: Xiao | + | [[Category: Xiao R]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a probable oxidoreductase yhhX in Triclinic form. Northeast Structural Genomics target ER647
| |||||||||||
Categories: Escherichia coli K-12 | Large Structures | Abashidze M | Acton TB | Everett JK | Foote EL | Hunt JF | Janjua H | Montelione GT | Nair R | Rost B | Seetharaman J | Tong L | Wang H | Xiao R
