This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3f7k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:29, 28 December 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==X-ray Crystal Structure of an Alvinella pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex==
==X-ray Crystal Structure of an Alvinella pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex==
-
<StructureSection load='3f7k' size='340' side='right' caption='[[3f7k]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
+
<StructureSection load='3f7k' size='340' side='right'caption='[[3f7k]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3f7k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Alvinella_pompejana Alvinella pompejana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F7K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F7K FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3f7k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alvinella_pompejana Alvinella pompejana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F7K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F7K FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3f7l|3f7l]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f7k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f7k OCA], [https://pdbe.org/3f7k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f7k RCSB], [https://www.ebi.ac.uk/pdbsum/3f7k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f7k ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f7k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f7k OCA], [http://pdbe.org/3f7k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3f7k RCSB], [http://www.ebi.ac.uk/pdbsum/3f7k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3f7k ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/B6CHW7_9ANNE B6CHW7_9ANNE] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.[RuleBase:RU000393]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 30: Line 31:
==See Also==
==See Also==
-
*[[Superoxide Dismutase|Superoxide Dismutase]]
+
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 36: Line 37:
</StructureSection>
</StructureSection>
[[Category: Alvinella pompejana]]
[[Category: Alvinella pompejana]]
-
[[Category: Superoxide dismutase]]
+
[[Category: Large Structures]]
-
[[Category: Barondeau, D P]]
+
[[Category: Barondeau DP]]
-
[[Category: DiDonato, M]]
+
[[Category: DiDonato M]]
-
[[Category: Getzoff, E D]]
+
[[Category: Getzoff ED]]
-
[[Category: Shin, D S]]
+
[[Category: Shin DS]]
-
[[Category: Tainer, J A]]
+
[[Category: Tainer JA]]
-
[[Category: Al]]
+
-
[[Category: Amyloid filament]]
+
-
[[Category: Amyotrophic lateral sclerosis]]
+
-
[[Category: Eukaryotic thermophile]]
+
-
[[Category: Fal]]
+
-
[[Category: Greek key beta-barrel]]
+
-
[[Category: Hydrogen peroxide product complex]]
+
-
[[Category: Lou gehrig's disease]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Pompeii worm]]
+
-
[[Category: Thermostable protein]]
+

Current revision

X-ray Crystal Structure of an Alvinella pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex

PDB ID 3f7k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3f7k"
Personal tools