This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3fdi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:31, 28 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of uncharacterized protein from Eubacterium ventriosum ATCC 27560.==
==Crystal structure of uncharacterized protein from Eubacterium ventriosum ATCC 27560.==
-
<StructureSection load='3fdi' size='340' side='right' caption='[[3fdi]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='3fdi' size='340' side='right'caption='[[3fdi]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3fdi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Eubacterium_ventriosum_atcc_27560 Eubacterium ventriosum atcc 27560]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FDI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3fdi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Eubacterium_ventriosum_ATCC_27560 Eubacterium ventriosum ATCC 27560]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FDI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EUBVEN_02315 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=411463 Eubacterium ventriosum ATCC 27560])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fdi OCA], [https://pdbe.org/3fdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fdi RCSB], [https://www.ebi.ac.uk/pdbsum/3fdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fdi ProSAT], [https://www.topsan.org/Proteins/MCSG/3fdi TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fdi OCA], [http://pdbe.org/3fdi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fdi RCSB], [http://www.ebi.ac.uk/pdbsum/3fdi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3fdi ProSAT], [http://www.topsan.org/Proteins/MCSG/3fdi TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A5Z9C0_9FIRM A5Z9C0_9FIRM]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fdi_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fdi_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Eubacterium ventriosum atcc 27560]]
+
[[Category: Eubacterium ventriosum ATCC 27560]]
-
[[Category: Jedrzejczak, R]]
+
[[Category: Large Structures]]
-
[[Category: Joachimiak, A]]
+
[[Category: Jedrzejczak R]]
-
[[Category: Keigher, L]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Keigher L]]
-
[[Category: Nocek, B]]
+
[[Category: Nocek B]]
-
[[Category: Cytidylate kinase like protein]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Prk04182 class member]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of uncharacterized protein from Eubacterium ventriosum ATCC 27560.

PDB ID 3fdi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools