This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4p7x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:41, 28 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==L-pipecolic acid-bound L-proline cis-4-hydroxylase==
==L-pipecolic acid-bound L-proline cis-4-hydroxylase==
-
<StructureSection load='4p7x' size='340' side='right' caption='[[4p7x]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
+
<StructureSection load='4p7x' size='340' side='right'caption='[[4p7x]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4p7x]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P7X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4P7X FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4p7x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesorhizobium_japonicum_MAFF_303099 Mesorhizobium japonicum MAFF 303099]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P7X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P7X FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=YCP:(2S)-PIPERIDINE-2-CARBOXYLIC+ACID'>YCP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p7x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p7x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4p7x RCSB], [http://www.ebi.ac.uk/pdbsum/4p7x PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=YCP:(2S)-PIPERIDINE-2-CARBOXYLIC+ACID'>YCP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p7x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p7x OCA], [https://pdbe.org/4p7x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p7x RCSB], [https://www.ebi.ac.uk/pdbsum/4p7x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p7x ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/P4H_RHILO P4H_RHILO]] Dioxygenase that catalyzes the 2-oxoglutarate-dependent selective hydroxylation of free L-proline to cis-4-hydroxy-L-proline (cis-4-Hyp).<ref>PMID:19133227</ref>
+
[https://www.uniprot.org/uniprot/P4H_RHILO P4H_RHILO] Dioxygenase that catalyzes the 2-oxoglutarate-dependent selective hydroxylation of free L-proline to cis-4-hydroxy-L-proline (cis-4-Hyp).<ref>PMID:19133227</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4p7x" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Hydroxylases 3D structures|Hydroxylases 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Hara, R]]
+
[[Category: Large Structures]]
-
[[Category: Hayashi, M]]
+
[[Category: Mesorhizobium japonicum MAFF 303099]]
-
[[Category: Higuchi, Y]]
+
[[Category: Hara R]]
-
[[Category: Kino, K]]
+
[[Category: Hayashi M]]
-
[[Category: Koketsu, K]]
+
[[Category: Higuchi Y]]
-
[[Category: Mitsuhashi, S]]
+
[[Category: Kino K]]
-
[[Category: Moriwaki, K]]
+
[[Category: Koketsu K]]
-
[[Category: Shomura, Y]]
+
[[Category: Mitsuhashi S]]
-
[[Category: Hydroxylase]]
+
[[Category: Moriwaki K]]
-
[[Category: Proline]]
+
[[Category: Shomura Y]]

Current revision

L-pipecolic acid-bound L-proline cis-4-hydroxylase

PDB ID 4p7x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools