4p99

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'''Unreleased structure'''
 
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The entry 4p99 is ON HOLD
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==Ca2+-stabilized adhesin helps an Antarctic bacterium reach out and bind ice==
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<StructureSection load='4p99' size='340' side='right'caption='[[4p99]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4p99]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Marinomonas_primoryensis Marinomonas primoryensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P99 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P99 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p99 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p99 OCA], [https://pdbe.org/4p99 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p99 RCSB], [https://www.ebi.ac.uk/pdbsum/4p99 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p99 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A075B5G5_9GAMM A0A075B5G5_9GAMM]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The large size of a 1.5-MDa ice-binding adhesin (MpAFP) from an Antarctic Gram-negative bacterium, Marinomonas primoryensis, is mainly due to its highly repetitive Region II (RII). MpAFP_RII contains roughly 120 tandem copies of an identical 104-residue repeat. We have previously determined that a single RII repeat folds as a Ca2+-dependent immunoglobulin-like domain. Here, we solved the crystal structure of four tandem RII repeats (RII tetra-tandemer) to a resolution of 1.8 A. The RII tetra-tandemer reveals an extended (~190-A x ~25-A), rod-like structure with four RII-repeats aligned in series with each other. The inter-repeat regions of the RII tetra-tandemer are strengthened by Ca2+ bound to acidic residues. Small-angle X-ray scattering profiles indicate the RII tetra-tandemer is significantly rigidified upon Ca2+ binding, and that the protein's solution structure is in excellent agreement with its crystal structure. We hypothesize that &gt;600 Ca2+ help rigidify the chain of ~120 104-residue repeats to form a ~0.6 microm rod-like structure in order to project the ice-binding domain of MpAFP away from the bacterial cell surface. The proposed extender role of RII can help the strictly aerobic, motile bacterium bind ice in the upper reaches of the Antarctic lake where oxygen and nutrients are most abundant. Ca2+-induced rigidity of tandem Ig-like repeats in large adhesins might be a general mechanism used by bacteria to bind to their substrates and help colonize specific niches.
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Authors: Guo, S., Vance, D.R.T., Campbell, R.L., Davies, P.L.
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Ca2+-stabilized adhesin helps an Antarctic bacterium reach out and bind ice.,Vance TD, Olijve LL, Campbell RL, Voets IK, Davies PL, Guo S Biosci Rep. 2014 Jun 3. PMID:24892750<ref>PMID:24892750</ref>
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Description: Ca2+-stabilized adhesin helps an Antarctic bacterium reach out and bind ice
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4p99" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Marinomonas primoryensis]]
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[[Category: Campbell RL]]
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[[Category: Davies PL]]
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[[Category: Guo S]]
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[[Category: Vance DRT]]

Current revision

Ca2+-stabilized adhesin helps an Antarctic bacterium reach out and bind ice

PDB ID 4p99

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