4zd3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:59, 10 January 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4zd3 is ON HOLD until Paper Publication
+
==Structure of a transglutaminase 2-specific autoantibody Fab fragment==
 +
<StructureSection load='4zd3' size='340' side='right'caption='[[4zd3]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4zd3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZD3 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zd3 OCA], [https://pdbe.org/4zd3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zd3 RCSB], [https://www.ebi.ac.uk/pdbsum/4zd3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zd3 ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Antibodies to the autoantigen transglutaminase 2 (TG2) are a hallmark of celiac disease. We have studied the interaction between TG2 and an anti-TG2 antibody (679-14-E06) derived from a single gut IgA plasma cell of a celiac disease patient. The antibody recognizes one of four identified epitopes targeted by antibodies of plasma cells of the disease lesion. The binding interface was identified by small angle X-ray scattering, ab initio and rigid body modeling using the known crystal structure of TG2 and the crystal structure of the antibody Fab fragment, which was solved at 2.4 A resolution. The result was confirmed by testing binding of the antibody to TG2 mutants by ELISA and surface plasmon resonance. TG2 residues R116 and H134 were identified to be critical for binding of 679-14-E06 as well as other epitope 1 antibodies. In contrast, antibodies directed toward the two other main epitopes (epitopes 2 and 3) were not affected by these mutations. Molecular dynamics simulations suggest interactions of 679-14-E06 with the N-terminal domain of TG2 via the CDR2 and CDR3 loops of the heavy chain and the CDR2 loop of the light chain. In addition there were contacts of the framework 3 region of the heavy chain with the catalytic domain of TG2. The results provide an explanation for the biased usage of certain heavy and light chain gene segments by epitope 1-specific antibodies in celiac disease.
-
Authors: Chen, X., Dalhus, B., Hnida, K., Iversen, R., Sollid, L.M.
+
Structural basis for antigen recognition by transglutaminase 2-specific autoantibodies in celiac disease.,Chen X, Hnida K, Graewert MA, Andersen JT, Iversen R, Tuukkanen A, Svergun D, Sollid LM J Biol Chem. 2015 Jul 9. pii: jbc.M115.669895. PMID:26160175<ref>PMID:26160175</ref>
-
Description: Structure of a transglutaminase 2-specific autoantibody Fab fragment
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Iversen, R]]
+
<div class="pdbe-citations 4zd3" style="background-color:#fffaf0;"></div>
-
[[Category: Hnida, K]]
+
== References ==
-
[[Category: Sollid, L.M]]
+
<references/>
-
[[Category: Chen, X]]
+
__TOC__
-
[[Category: Dalhus, B]]
+
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Chen X]]
 +
[[Category: Dalhus B]]
 +
[[Category: Hnida K]]
 +
[[Category: Iversen R]]
 +
[[Category: Sollid LM]]

Current revision

Structure of a transglutaminase 2-specific autoantibody Fab fragment

PDB ID 4zd3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools