This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5a8q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:05, 10 January 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure beta-glucanase SdGluc5_26A from Saccharophagus degradans in complex with tetrasaccharide A obtained by soaking==
==Crystal structure beta-glucanase SdGluc5_26A from Saccharophagus degradans in complex with tetrasaccharide A obtained by soaking==
-
<StructureSection load='5a8q' size='340' side='right' caption='[[5a8q]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='5a8q' size='340' side='right'caption='[[5a8q]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5a8q]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5A8Q FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5a8q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharophagus_degradans_2-40 Saccharophagus degradans 2-40]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A8Q FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GXT:ETHANEDIAL'>GXT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5a8m|5a8m]], [[5a8n|5a8n]], [[5a8o|5a8o]], [[5a8p|5a8p]], [[5a94|5a94]], [[5a95|5a95]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GXT:ETHANEDIAL'>GXT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Licheninase Licheninase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.73 3.2.1.73] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a8q OCA], [https://pdbe.org/5a8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a8q RCSB], [https://www.ebi.ac.uk/pdbsum/5a8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a8q ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5a8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a8q OCA], [http://pdbe.org/5a8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5a8q RCSB], [http://www.ebi.ac.uk/pdbsum/5a8q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5a8q ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q21KE5_SACD2 Q21KE5_SACD2]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Licheninase]]
+
[[Category: Large Structures]]
-
[[Category: Berrin, J G]]
+
[[Category: Saccharophagus degradans 2-40]]
-
[[Category: Coutinho, R M]]
+
[[Category: Berrin JG]]
-
[[Category: Freyd, T]]
+
[[Category: Coutinho RM]]
-
[[Category: Garron, M L]]
+
[[Category: Freyd T]]
-
[[Category: Henrissat, B]]
+
[[Category: Garron ML]]
-
[[Category: Lafond, M]]
+
[[Category: Henrissat B]]
-
[[Category: Sulzenbacher, G]]
+
[[Category: Lafond M]]
-
[[Category: Beta-glucanase]]
+
[[Category: Sulzenbacher G]]
-
[[Category: Cazyme]]
+
-
[[Category: Gh5_26]]
+
-
[[Category: Glycoside hydrolase]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure beta-glucanase SdGluc5_26A from Saccharophagus degradans in complex with tetrasaccharide A obtained by soaking

PDB ID 5a8q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5a8q"
Personal tools