This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ajn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5ajn" [edit=sysop:move=sysop])
Current revision (11:11, 10 January 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5ajn is ON HOLD
+
==Crystal structure of the inactive form of GalNAc-T2 in complex with the glycopeptide MUC5AC-Cys13==
 +
<StructureSection load='5ajn' size='340' side='right'caption='[[5ajn]], [[Resolution|resolution]] 1.67&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5ajn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AJN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AJN FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.67&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ajn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ajn OCA], [https://pdbe.org/5ajn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ajn RCSB], [https://www.ebi.ac.uk/pdbsum/5ajn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ajn ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MUC5A_HUMAN MUC5A_HUMAN] Gel-forming glycoprotein of gastric and respiratory tract epithelia that protects the mucosa from infection and chemical damage by binding to inhaled microorganisms and particles that are subsequently removed by the mucociliary system (PubMed:14535999, PubMed:14718370). Interacts with H.pylori in the gastric epithelium, Barrett's esophagus as well as in gastric metaplasia of the duodenum (GMD) (PubMed:14535999).<ref>PMID:14535999</ref> <ref>PMID:14535999</ref> <ref>PMID:14718370</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Protein O-glycosylation is controlled by polypeptide GalNAc-transferases (GalNAc-Ts) that uniquely feature both a catalytic and lectin domain. The underlying molecular basis of how the lectin domains of GalNAc-Ts contribute to glycopeptide specificity and catalysis remains unclear. Here we present the first crystal structures of complexes of GalNAc-T2 with glycopeptides that together with enhanced sampling molecular dynamics simulations demonstrate a cooperative mechanism by which the lectin domain enables free acceptor sites binding of glycopeptides into the catalytic domain. Atomic force microscopy and small-angle X-ray scattering experiments further reveal a dynamic conformational landscape of GalNAc-T2 and a prominent role of compact structures that are both required for efficient catalysis. Our model indicates that the activity profile of GalNAc-T2 is dictated by conformational heterogeneity and relies on a flexible linker located between the catalytic and the lectin domains. Our results also shed light on how GalNAc-Ts generate dense decoration of proteins with O-glycans.
-
Authors: Lira-Navarrete, E., delasRivas, M., Companon, I., Pallares, M.C., Kong, Y., Iglesias-Fernandez, J., Bernardes, G.J.L., Peregrina, J.M., Rovira, C., Bernado, P., Bruscolini, P., Clausen, H., Lostao, A., Corzana, F., Hurtado-Guerrero, R.
+
Dynamic interplay between catalytic and lectin domains of GalNAc-transferases modulates protein O-glycosylation.,Lira-Navarrete E, de Las Rivas M, Companon I, Pallares MC, Kong Y, Iglesias-Fernandez J, Bernardes GJ, Peregrina JM, Rovira C, Bernado P, Bruscolini P, Clausen H, Lostao A, Corzana F, Hurtado-Guerrero R Nat Commun. 2015 May 5;6:6937. doi: 10.1038/ncomms7937. PMID:25939779<ref>PMID:25939779</ref>
-
Description: Crystal structure of the inactive form of GalNAc-T2 in complex with the glycopeptide MUC5AC-Cys13
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Bruscolini, P]]
+
<div class="pdbe-citations 5ajn" style="background-color:#fffaf0;"></div>
-
[[Category: Clausen, H]]
+
== References ==
-
[[Category: Kong, Y]]
+
<references/>
-
[[Category: Pallares, M.C]]
+
__TOC__
-
[[Category: Rovira, C]]
+
</StructureSection>
-
[[Category: Peregrina, J.M]]
+
[[Category: Homo sapiens]]
-
[[Category: Iglesias-Fernandez, J]]
+
[[Category: Large Structures]]
-
[[Category: Bernardes, G.J.L]]
+
[[Category: Bernado P]]
-
[[Category: Hurtado-Guerrero, R]]
+
[[Category: Bernardes GJL]]
-
[[Category: Lira-Navarrete, E]]
+
[[Category: Bruscolini P]]
-
[[Category: Lostao, A]]
+
[[Category: Clausen H]]
-
[[Category: Delasrivas, M]]
+
[[Category: Companon I]]
-
[[Category: Bernado, P]]
+
[[Category: Corzana F]]
-
[[Category: Corzana, F]]
+
[[Category: Hurtado-Guerrero R]]
-
[[Category: Companon, I]]
+
[[Category: Iglesias-Fernandez J]]
 +
[[Category: Kong Y]]
 +
[[Category: Lira-Navarrete E]]
 +
[[Category: Lostao A]]
 +
[[Category: Pallares MC]]
 +
[[Category: Peregrina JM]]
 +
[[Category: Rovira C]]
 +
[[Category: DelasRivas M]]

Current revision

Crystal structure of the inactive form of GalNAc-T2 in complex with the glycopeptide MUC5AC-Cys13

PDB ID 5ajn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools