This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5bp2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:16, 10 January 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Dehydratase domain (DH) of a mycocerosic acid synthase-like (MAS-like) PKS, crystal form 1==
==Dehydratase domain (DH) of a mycocerosic acid synthase-like (MAS-like) PKS, crystal form 1==
-
<StructureSection load='5bp2' size='340' side='right' caption='[[5bp2]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
+
<StructureSection load='5bp2' size='340' side='right'caption='[[5bp2]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5bp2]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BP2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BP2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5bp2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycolicibacterium_smegmatis_MC2_155 Mycolicibacterium smegmatis MC2 155]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BP2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BP2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5bp3|5bp3]], [[5bp4|5bp4]], [[5bp5|5bp5]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bp2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bp2 OCA], [http://pdbe.org/5bp2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bp2 RCSB], [http://www.ebi.ac.uk/pdbsum/5bp2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bp2 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bp2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bp2 OCA], [https://pdbe.org/5bp2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bp2 RCSB], [https://www.ebi.ac.uk/pdbsum/5bp2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bp2 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PKS5_MYCS2 PKS5_MYCS2]] Polyketide synthase involved in the biosynthesis of 2,4-dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.<ref>PMID:19181796</ref>
+
[https://www.uniprot.org/uniprot/PKS5_MYCS2 PKS5_MYCS2] Polyketide synthase involved in the biosynthesis of 2,4-dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.<ref>PMID:19181796</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Herbst, D A]]
+
[[Category: Large Structures]]
-
[[Category: Jakob, P R]]
+
[[Category: Mycolicibacterium smegmatis MC2 155]]
-
[[Category: Maier, T]]
+
[[Category: Herbst DA]]
-
[[Category: Zaehringer, F]]
+
[[Category: Jakob PR]]
-
[[Category: Dehydratase]]
+
[[Category: Maier T]]
-
[[Category: Dh]]
+
[[Category: Zaehringer F]]
-
[[Category: Lyase]]
+
-
[[Category: Pk]]
+
-
[[Category: Polyketide]]
+

Current revision

Dehydratase domain (DH) of a mycocerosic acid synthase-like (MAS-like) PKS, crystal form 1

PDB ID 5bp2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5bp2"
Personal tools