This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5bys

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:17, 10 January 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='5bys' size='340' side='right'caption='[[5bys]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
<StructureSection load='5bys' size='340' side='right'caption='[[5bys]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5bys]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BYS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5BYS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5bys]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BYS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BYS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4WX:BIS(CYANIDO-KAPPAC)(DICARBONYL)-MU-(OXOMETHYLIDENE)-MU-(SULFANEDIYLDIMETHANETHIOLATATO-1KAPPAS 2KAPPAS)DIIRON(2+)'>4WX</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4xdd|4xdd]], [[4xdc|4xdc]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4WX:BIS(CYANIDO-KAPPAC)(DICARBONYL)-MU-(OXOMETHYLIDENE)-MU-(SULFANEDIYLDIMETHANETHIOLATATO-1KAPPAS 2KAPPAS)DIIRON(2+)'>4WX</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin_hydrogenase Ferredoxin hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.7.2 1.12.7.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bys FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bys OCA], [https://pdbe.org/5bys PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bys RCSB], [https://www.ebi.ac.uk/pdbsum/5bys PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bys ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5bys FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bys OCA], [http://pdbe.org/5bys PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bys RCSB], [http://www.ebi.ac.uk/pdbsum/5bys PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bys ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PHF1_CLOPA PHF1_CLOPA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ferredoxin hydrogenase]]
+
[[Category: Clostridium pasteurianum]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Engelbrecht, V]]
+
[[Category: Engelbrecht V]]
-
[[Category: Esselborn, J]]
+
[[Category: Esselborn J]]
-
[[Category: Happe, T]]
+
[[Category: Happe T]]
-
[[Category: Hofmann, E]]
+
[[Category: Hofmann E]]
-
[[Category: Kurisu, G]]
+
[[Category: Kurisu G]]
-
[[Category: Muraki, N]]
+
[[Category: Muraki N]]
-
[[Category: H-cluster]]
+
-
[[Category: Hydrogenase]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Semisynthetic enzyme]]
+

Current revision

Semisynthetic [FeFe]-hydrogenase CpI with sulfur-dithiolato-bridged [2Fe] cofactor

PDB ID 5bys

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools