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5cdm

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==2.5A structure of QPT-1 with S.aureus DNA gyrase and DNA==
==2.5A structure of QPT-1 with S.aureus DNA gyrase and DNA==
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<StructureSection load='5cdm' size='340' side='right' caption='[[5cdm]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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<StructureSection load='5cdm' size='340' side='right'caption='[[5cdm]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5cdm]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CDM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5cdm]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CDM FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=54Q:(2R,4S,4AS)-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5-PYRIMIDINE]-2,4,6(1H,3H)-TRIONE'>54Q</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=54Q:(2R,4S,4AS)-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5-PYRIMIDINE]-2,4,6(1H,3H)-TRIONE'>54Q</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cdm OCA], [https://pdbe.org/5cdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cdm RCSB], [https://www.ebi.ac.uk/pdbsum/5cdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cdm ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cdm OCA], [http://pdbe.org/5cdm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cdm RCSB], [http://www.ebi.ac.uk/pdbsum/5cdm PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/GYRB_STAAN GYRB_STAAN]] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity). [[http://www.uniprot.org/uniprot/GYRA_STAAN GYRA_STAAN]] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.[HAMAP-Rule:MF_01897]
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[https://www.uniprot.org/uniprot/GYRB_STAAN GYRB_STAAN] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5cdm" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5cdm" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Gyrase 3D Structures|Gyrase 3D Structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bax, B D]]
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[[Category: Large Structures]]
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[[Category: Chan, P F]]
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[[Category: Staphylococcus aureus]]
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[[Category: Srikannathasan, V]]
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[[Category: Synthetic construct]]
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[[Category: Antibacterial]]
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[[Category: Bax BD]]
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[[Category: Inhibitor]]
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[[Category: Chan PF]]
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[[Category: Isomerase]]
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[[Category: Srikannathasan V]]
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[[Category: Type iia topoisomerase]]
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Current revision

2.5A structure of QPT-1 with S.aureus DNA gyrase and DNA

PDB ID 5cdm

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