This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5d63

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:24, 10 January 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==MOA-Z-VAD-fmk inhibitor complex, direct/inverted dual orientation==
==MOA-Z-VAD-fmk inhibitor complex, direct/inverted dual orientation==
-
<StructureSection load='5d63' size='340' side='right' caption='[[5d63]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='5d63' size='340' side='right'caption='[[5d63]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5d63]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D63 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D63 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5d63]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Marasmius_oreades Marasmius oreades] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D63 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5D63 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CF0:FLUOROMETHANE'>CF0</scene>, <scene name='pdbligand=PHQ:BENZYL+CHLOROCARBONATE'>PHQ</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CF0:FLUOROMETHANE'>CF0</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PHQ:BENZYL+CHLOROCARBONATE'>PHQ</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ef2|3ef2]], [[2iho|2iho]], [[5d61|5d61]], [[5d62|5d62]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5d63 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d63 OCA], [https://pdbe.org/5d63 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5d63 RCSB], [https://www.ebi.ac.uk/pdbsum/5d63 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5d63 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d63 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d63 OCA], [http://pdbe.org/5d63 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d63 RCSB], [http://www.ebi.ac.uk/pdbsum/5d63 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d63 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8X123_9AGAR Q8X123_9AGAR]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5d63" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5d63" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cordara, G]]
+
[[Category: Large Structures]]
-
[[Category: Krengel, U]]
+
[[Category: Marasmius oreades]]
-
[[Category: Fungal]]
+
[[Category: Synthetic construct]]
-
[[Category: Hydrolase]]
+
[[Category: Cordara G]]
-
[[Category: Inhibitor]]
+
[[Category: Krengel U]]
-
[[Category: Papain-like]]
+
-
[[Category: Protease]]
+

Current revision

MOA-Z-VAD-fmk inhibitor complex, direct/inverted dual orientation

PDB ID 5d63

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5d63"
Personal tools